BAC Information

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BAC

Clone NameMSMg01-505F15
Chromosome1 (Build37)
Map Location 176,929,086 - 177,096,552
singlet/doubletdoublet
Overlap geneRgs7
Upstream geneIfi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505F15.T7 (MSMg01no505_f15.b1)MSMg01-505F15.TJ (MSMg01no505_f15.g1)
ACCAG580012AG580013
length763761
length of high quality
(start - end)		689 (69 - 757)667 (75 - 741)
definitionCHROMAT_FILE: MSMg01no505_f15.b1 PHD_FILE: MSMg01no505_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:14 2005CHROMAT_FILE: MSMg01no505_f15.g1 PHD_FILE: MSMg01no505_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,929,086 - 176,929,774)(177,096,032 - 177,096,552)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCG
CGGAATTCAAGATTTCGTGCTAAAACCTGTAATCCTAGTTTCCTGCAGGG
TCTGTCTTTTGTAGAAATTTTAAGTTTGGAGAACCTCACTGAAACAGGAT
GCCAGGCTGAGGTACGCCTTGATAGTTATGAAAAATAAACTGGACTGTCT
AAATCGAGAAAAAAACCAAAACCTTACCTTTCAGATTTTAGCACAGAGGA
GAAAAGATTCAAGTTATTCAATGACCCAAAAGATAGGAGAAACCAACCCA
TGCCACAGGCACTGTTCTTACTGTCACTTGAACTACAGAGCTAATCAGAT
CCCCCAAATCCCAACATCACCAACAGTGCTCATGGCTTACCAACTTCAAC
ACAGATAAATGGCCCCATTAACGTCAGGGCAGTTGTGTTTGTCCAGGGAA
TAGACGTCTGTATTTTAAATTGCATTATCCAGATTATCCAAGGGATAAGA
AATGTTTACTTTCACAGATTCCAGGCTTCTGAGCTGAGTTAAACAGGACA
AGTTTAAAGGCAGGGGCTCAGAGAAGTACAGGGCATGTTGACAGCTCTGC
TGTGGTCTGCAGAGGCTGAGTTAGGAGAATCCAAGCTTATCTCTGCGCTC
CTGGGCTGAAAGCTGGGGGCTCTCAGGCCTTCCTGCTACCTGTGTCCTCT
GCGTGGCTGCTGGTGTAAGATGGACAGGTAGAGGGAGTAGAAATGGCCTA
TGAAGAATTTGCT

NACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGTGCTTATTGATATAAGGAGGCT
GATATCTGCAAACATTGCTCTTGTGACTCTCCCTTCTCTCTTTTTGCCCT
TGTCAATTTCACTCAGTCATTTAAATGATTGCACTTATCTCCCACCACCA
GTTCCATTTCTCCTTTACACATTGCTTGCTCGCTCTGAGGTTTGCAGCAT
AGATCTTCCCTTAGCTACTCCCATCTTCACATGACATTACCCTCTTACAC
TATTTGGCTTCTCAAGTCTTTTAGGGACCATATCCCAGGGTACTCCTAGT
TCATCTCTTCCATTTAATTGATTGATATTTTCTAATGTTTTAACACAGTG
GTACTCAACCTTCCTAATACTGTGACCCTTTACTATAGTTCCTCATACAG
TTTGTGTTGACCACCAACCATAAAATTATTTTCGTTGCTACTTCTAATCT
ATAATTTTGCTACTGTTATAAATTATATTGTAAATATCTGTGTTTTCTAG
TGATCTTAGTGGGCCTGTGAATAGAGATGCCCACCCTGAGGTTGAGAACC
ACTGCTCTTTTACATTTTTAAGTGTTATAACTTTTAACAGTTGTATTTTA
GAAAATTTAAGAATAACTAGATAAGATAGTGTTTTTAACCTTTACATTTT
CTTTCCCTGGNATTTTTCATTTCTCTAAATATTCATGTTTCTTATTTGTA
ATTCTTATGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_f15.b1 MSMg01no505_f15.b1 CHROMAT_FILE:
MSMg01no505_f15.b1 PHD_FILE: MSMg01no505_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:14 2005
         (689 letters)



>mm_chr1_176928886_176929974
          Length = 1089

 Score = 1332 bits (689), Expect = 0.0
 Identities = 689/689 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctaaaacctgtaatcctagtttcctgcagggtctgtcttttgtagaaattttaagtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctaaaacctgtaatcctagtttcctgcagggtctgtcttttgtagaaattttaagtttg 260

                                                                       
Query: 61  gagaacctcactgaaacaggatgccaggctgaggtacgccttgatagttatgaaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaacctcactgaaacaggatgccaggctgaggtacgccttgatagttatgaaaaataa 320

                                                                       
Query: 121 actggactgtctaaatcgagaaaaaaaccaaaaccttacctttcagattttagcacagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggactgtctaaatcgagaaaaaaaccaaaaccttacctttcagattttagcacagag 380

                                                                       
Query: 181 gagaaaagattcaagttattcaatgacccaaaagataggagaaaccaacccatgccacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaaagattcaagttattcaatgacccaaaagataggagaaaccaacccatgccacag 440

                                                                       
Query: 241 gcactgttcttactgtcacttgaactacagagctaatcagatcccccaaatcccaacatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcactgttcttactgtcacttgaactacagagctaatcagatcccccaaatcccaacatc 500

                                                                       
Query: 301 accaacagtgctcatggcttaccaacttcaacacagataaatggccccattaacgtcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accaacagtgctcatggcttaccaacttcaacacagataaatggccccattaacgtcagg 560

                                                                       
Query: 361 gcagttgtgtttgtccagggaatagacgtctgtattttaaattgcattatccagattatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagttgtgtttgtccagggaatagacgtctgtattttaaattgcattatccagattatc 620

                                                                       
Query: 421 caagggataagaaatgtttactttcacagattccaggcttctgagctgagttaaacagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagggataagaaatgtttactttcacagattccaggcttctgagctgagttaaacagga 680

                                                                       
Query: 481 caagtttaaaggcaggggctcagagaagtacagggcatgttgacagctctgctgtggtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagtttaaaggcaggggctcagagaagtacagggcatgttgacagctctgctgtggtct 740

                                                                       
Query: 541 gcagaggctgagttaggagaatccaagcttatctctgcgctcctgggctgaaagctgggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcagaggctgagttaggagaatccaagcttatctctgcgctcctgggctgaaagctgggg 800

                                                                       
Query: 601 gctctcaggccttcctgctacctgtgtcctctgcgtggctgctggtgtaagatggacagg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctctcaggccttcctgctacctgtgtcctctgcgtggctgctggtgtaagatggacagg 860

                                        
Query: 661 tagagggagtagaaatggcctatgaagaa 689
           |||||||||||||||||||||||||||||
Sbjct: 861 tagagggagtagaaatggcctatgaagaa 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no505_f15.g1 MSMg01no505_f15.g1 CHROMAT_FILE:
MSMg01no505_f15.g1 PHD_FILE: MSMg01no505_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:14 2005
         (667 letters)



>mm_chr1_177096032_177097098
          Length = 1067

 Score = 1007 bits (521), Expect = 0.0
 Identities = 521/521 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtgcttattgatataaggaggctgatatctgcaaacattgctcttgtgactctccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aatgtgcttattgatataaggaggctgatatctgcaaacattgctcttgtgactctccct 462

                                                                       
Query: 61  tctctctttttgcccttgtcaatttcactcagtcatttaaatgattgcacttatctccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tctctctttttgcccttgtcaatttcactcagtcatttaaatgattgcacttatctccca 402

                                                                       
Query: 121 ccaccagttccatttctcctttacacattgcttgctcgctctgaggtttgcagcatagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccaccagttccatttctcctttacacattgcttgctcgctctgaggtttgcagcatagat 342

                                                                       
Query: 181 cttcccttagctactcccatcttcacatgacattaccctcttacactatttggcttctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cttcccttagctactcccatcttcacatgacattaccctcttacactatttggcttctca 282

                                                                       
Query: 241 agtcttttagggaccatatcccagggtactcctagttcatctcttccatttaattgattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agtcttttagggaccatatcccagggtactcctagttcatctcttccatttaattgattg 222

                                                                       
Query: 301 atattttctaatgttttaacacagtggtactcaaccttcctaatactgtgaccctttact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atattttctaatgttttaacacagtggtactcaaccttcctaatactgtgaccctttact 162

                                                                       
Query: 361 atagttcctcatacagtttgtgttgaccaccaaccataaaattattttcgttgctacttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atagttcctcatacagtttgtgttgaccaccaaccataaaattattttcgttgctacttc 102

                                                                       
Query: 421 taatctataattttgctactgttataaattatattgtaaatatctgtgttttctagtgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 taatctataattttgctactgttataaattatattgtaaatatctgtgttttctagtgat 42

                                                    
Query: 481 cttagtgggcctgtgaatagagatgcccaccctgaggttga 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  cttagtgggcctgtgaatagagatgcccaccctgaggttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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