BAC Information

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BAC

Clone NameMSMg01-505G13
Chromosome1 (Build37)
Map Location 171,028,579 - 171,181,789
singlet/doubletdoublet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505G13.T7 (MSMg01no505_g13.b1)MSMg01-505G13.TJ (MSMg01no505_g13.g1)
ACCAG580056AG580057
length757767
length of high quality
(start - end)
309 (323 - 631)239 (79 - 317)
definitionCHROMAT_FILE: MSMg01no505_g13.b1 PHD_FILE: MSMg01no505_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:19 2005CHROMAT_FILE: MSMg01no505_g13.g1 PHD_FILE: MSMg01no505_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,181,481 - 171,181,789)(171,028,579 - 171,028,817)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXATACAGTAGAGGATCCGCG
GAATTCAATGTTCCCATGAGGAGATAGTTAAATAGCATTATCTGGAATTT
TATTTTGTATAGTAGAGTATTTTTATGTTGGGTTTTCTGACATTCTCCTC
ATGTTCCACTTTGAACATTCGTTGTAGATCTTAGCTCAGATCTCTTCAGT
TGCAGTTAAGTGTATTAAGTCAGAGGTGCATACTGACTGTACTAACATGT
TTGTTTGTTTGCTTGCTTGCTTGCTTCCTTGCTTTTCCAAGACAGGGTCT
CTCTGTGTAGCCCTATTTGTTCTGGAACCCATTCTGTAGAGCAGGCTGGC
CTCAAACTCAGAGATCTTCTGCCTCTTTCTCCTGAGTGCCAGGATTAAAT
CATACCTCACCACTGCCCAGCTATGTGGAATTATTTTAATTATTTTAATT
TCTGCATGTTTGGTTGAATTATAAAGATGATTTTCTAGGAATAACAGCAA
CCTTTACTATAAAGCTGAGAAGATAAAACATGGACAGAATAGAGACAAAT
TAGGAGGTTTTAACTAATAGAATGCTATTTTTTCACAGTAATTATTATTA
GAATAATTTTACATGAAGAGTTTTAAAGTCATAGAGAGTTCAGTTTGAAT
CTAGTCTGTATTGCTAATAGAGTGGTTTTAACCAATTAATGGTCTCTAAT
TTGAGGTAGTAACATTATATCAATAAGAAGCCTTAATAAAATTTTAATCA
CATAGTG
NGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCCCAAGGAGATCAGGCTTCTTCACACTGGAAGCC
ATGTAAGGTCACTTCCATCACATTCTAGAGAACAAAACTGAAGCCCTGGG
GACAAACTGCTGGGGTCTAACCACCTAGAGACGTATCTTGGACTAGGAGA
ACAATGAAAAACTTGCTATTGTGTTTCTGTGTAAGAATAAGGTTGAACAA
AGGTAAGAGGTCACTTTGGAAAATATCAAAGAAGACACATTGCTAAGGAA
GTATGTCTAAATGGGTCCTTTCTTCTAATGGTGAGCTCAGAGTGATGTAT
ATCTATTCTCCAGAGGACTTTCTGTTTGACCTATGATACTTTCATTTTCC
ACCCATGTGCCTGATAATAATAAAATCATAGATTAAAACTTATATCCCAG
CATGGAAAGGAAAAGGAATATCATTAAGGAGGACAGTAGAACTATACAAA
ATTTAAAAACAGAAGGTATGTGGATGACACAATGATTGGCCAAGATTGCC
ATGTTGATGATATTTAGAAAGGGCAAGAGAAGAAACCAAGAGACTGGGTC
TTCCAGCTTCTGCACTTTCCAAAATTGTGGCTCTTATATGTGTTTGTGTA
CAGATATCTGGCCAGACACATCTTGGTATGATTAGAGAGCATGGGAAGAC
TGTATTATCCCCTAACGCCACCTTCTCTAATATGCCCAAGGGTCTCCTGC
ACCATCATTAGTAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_g13.b1 MSMg01no505_g13.b1 CHROMAT_FILE:
MSMg01no505_g13.b1 PHD_FILE: MSMg01no505_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:19 2005
         (309 letters)



>mm_chr1_171181152_171181860
          Length = 709

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaacccattctgtagagcaggctggcctcaaactcagagatcttctgcctctttctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tggaacccattctgtagagcaggctggcctcaaactcagagatcttctgcctctttctcc 579

                                                                       
Query: 61  tgagtgccaggattaaatcatacctcaccactgcccagctatgtggaattattttaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgagtgccaggattaaatcatacctcaccactgcccagctatgtggaattattttaatta 519

                                                                       
Query: 121 ttttaatttctgcatgtttggttgaattataaagatgattttctaggaataacagcaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttttaatttctgcatgtttggttgaattataaagatgattttctaggaataacagcaacc 459

                                                                       
Query: 181 tttactataaagctgagaagataaaacatggacagaatagagacaaattaggaggtttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tttactataaagctgagaagataaaacatggacagaatagagacaaattaggaggtttta 399

                                                                       
Query: 241 actaatagaatgctattttttcacagtaattattattagaataattttacatgaagagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 actaatagaatgctattttttcacagtaattattattagaataattttacatgaagagtt 339

                    
Query: 301 ttaaagtca 309
           |||||||||
Sbjct: 338 ttaaagtca 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no505_g13.g1 MSMg01no505_g13.g1 CHROMAT_FILE:
MSMg01no505_g13.g1 PHD_FILE: MSMg01no505_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:19 2005
         (239 letters)



>mm_chr1_171028379_171029017
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcttcttcacactggaagccatgtaaggtcacttccatcacattctagagaacaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcttcttcacactggaagccatgtaaggtcacttccatcacattctagagaacaaaac 260

                                                                       
Query: 61  tgaagccctggggacaaactgctggggtctaaccacctagagacgtatcttggactagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagccctggggacaaactgctggggtctaaccacctagagacgtatcttggactagga 320

                                                                       
Query: 121 gaacaatgaaaaacttgctattgtgtttctgtgtaagaataaggttgaacaaaggtaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacaatgaaaaacttgctattgtgtttctgtgtaagaataaggttgaacaaaggtaaga 380

                                                                      
Query: 181 ggtcactttggaaaatatcaaagaagacacattgctaaggaagtatgtctaaatgggtc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcactttggaaaatatcaaagaagacacattgctaaggaagtatgtctaaatgggtc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)