BAC Information

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BAC

Clone NameMSMg01-505K04
Chromosome1 (Build37)
Map Location 188,100,777 - 188,101,135
singlet/doubletsinglet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
Downstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505K04.T7 (MSMg01no505_k04.b1)MSMg01-505K04.TJ (MSMg01no505_k04.g1)
ACCAG580226AG580227
length772772
length of high quality
(start - end)
363 (50 - 412)439 (76 - 514)
definitionCHROMAT_FILE: MSMg01no505_k04.b1 PHD_FILE: MSMg01no505_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:35 2005CHROMAT_FILE: MSMg01no505_k04.g1 PHD_FILE: MSMg01no505_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGCCTTTGCAGGTGATGGCCATTGAGCTGCCTAATTTCTC
CGTGCCCTTCACCTATGAGAGGGATGTTAACGAAAGGATCTGCACTAAGG
AGGCTAGAATGAAAATTAAATAAATGCTCAAGAAGTACTTAGACCATAGA
CCTTGGGTTCAATAAAATTTAGCTGGTGTACTTTCAATAGCAAAGTCCTT
ATTGCTATTTGGTGGTTCCTAGTAAAGTATCTCTAACTCATGGAAGAATT
AGGATGGTCCCTTTCACAGAAAGTCTTTTTCTGTGTGGGCTATGACAGTG
CTAAGTCTTCCAACTTCCCTATGGCTTCTACTAGCCAATAAGAAGGTTAT
GATGAACTTTCTGAGTTTCTCAAGAGTGGGGGAAAGCCCTTTCAATTGTT
GTGGATAGGTGAATGGTTATTTCTCCACAGGACATGGAAGCATGGGCCTA
GAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATG
GGAGAGCTAGAGAAAGTAACCCAAGAGCTAAAGGGATCTGCCACCCTATA
AGTGGAAACAACTTTATGAACTAACCCGAACCCTGGAGGTCTTGAATCTA
ACCTGCATATGGATCAAAAAAATAGGTTTAATCTGGCCCTTCCCTGGAAA
AGAAAAGGCCCTATGGAAATTTGAAAACCTTTAAATGGTCCCAGTACCCA
GGGGAATGGCCCCGGCCCCAAA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAATTTTGGACATAGTACTACCAGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCCAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACCAAGAAACTCACACAATATGGATTCACTTGATAA
GGGGAAATTTAGCCCCAAACCTTAGGAAAACCCCAGATATTAGATATATA
TTTGCTAAACACCTGAAACCTCCAAGGAGAATGAANAACTGAAAGGGTGG
GACACTATGGCCCCCTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_k04.b1 MSMg01no505_k04.b1 CHROMAT_FILE:
MSMg01no505_k04.b1 PHD_FILE: MSMg01no505_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:35 2005
         (363 letters)



>mm_chr1_188100573_188101335
          Length = 763

 Score =  578 bits (299), Expect = e-169
 Identities = 344/359 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgcctttgcaggtgatggccattgagctgcctaatttctccgtgcccttcacc 64
           |||||||||||   ||||||||  |||| |||||||||||||||||| ||||||||||||
Sbjct: 205 gaattcctgccccagcaggtgacagccactgagctgcctaatttctctgtgcccttcacc 264

                                                                       
Query: 65  tatgagagggatgttaacgaaaggatctgcactaaggaggctagaatgaaaattaaataa 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgagagggatgttaaggaaaggatctgcactaaggaggctagaatgaaaattaaataa 324

                                                                       
Query: 125 atgctcaagaagtacttagaccatagaccttgggttcaataaaatttagctggtgtactt 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 atgctcaagaagtacttagaccatagaccttgggttcagtaaaatttagctggtgtactt 384

                                                                       
Query: 185 tcaatagcaaagtccttattgctatttggtggttcctagtaaagtatctctaactcatgg 244
           ||| |||||||||||||||||||||||  |||||||||||||||| ||||||||||||||
Sbjct: 385 tcagtagcaaagtccttattgctatttaatggttcctagtaaagtgtctctaactcatgg 444

                                                                       
Query: 245 aagaattaggatggtccctttcacagaaagtctttttctgtgtgggctatgacagtgcta 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 aagatttaggatggtccctttcacagaaagtctttttctgtgtgggctatgacagcgcta 504

                                                                      
Query: 305 agtcttccaacttccctatggcttctactagccaataagaaggttatgatgaactttct 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtcttccaacttccctatggcttctactagccaataagaaggttatgatgaactttct 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)