BAC Information

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BAC

Clone NameMSMg01-506J01
Chromosome1 (Build37)
Map Location 60,055,448 - 60,055,989
singlet/doubletsinglet
Overlap geneIca1l
Upstream gene4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496
Downstream geneWdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506J01.T7 (MSMg01no506_j01.b1)MSMg01-506J01.TJ (MSMg01no506_j01.g1)
ACCAG580929AG580930
length793727
length of high quality
(start - end)		---542 (86 - 627)
definitionCHROMAT_FILE: MSMg01no506_j01.b1 PHD_FILE: MSMg01no506_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:49 2005CHROMAT_FILE: MSMg01no506_j01.g1 PHD_FILE: MSMg01no506_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGGCGTCAAAATNNCNCCNCTATACAACTCACTATATCCANNANATC
CNCGNAATTCCTTCATGATTACCATGTGGTAGCAAAAGGGTCTGTGGGTG
TGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTCCN
TCCCNAAANANNCACCTATTGAANNTNTGNNAACTAANNNNAAAGGGCAC
ATTTTGNCTAATGCATGGGTTTATTGATGATTTATCAATCATTGACCAAA
ACAAATTTTAAAATGGCANCTTATAAACTCCCGNAACAAAAGGGCCACCC
CTNNNNAANNAAAGAAACACAAAACCCANNCCAACTTGGAAATTTTTGGT
TTTTCCAAAAAAANNNCCCCCNCCAAAGNTTAAACAACCAAAAGCCCTTT
AAAAAAAAAAATCCTCAATTTGCAAAAAATTGCAAAAAATAAAAATTTTC
CCCCAAACTTTTTTTTAAACCCTTTAAAAAACCCCCCNACACCCACCTTT
AAAAATTTTTTATAAAACCCTTCTTTTTTTAAAACAAAATTNCCCCACCC
CCCCTTAAAAAAAAAAAAAANCCCCCCCCCCCCCCTTTTTCTCCAACCCC
CTTTTAAAAATACTTCTTTTTTCCCAACAAATCCCCNCCNCNNTCNCCCC
CCCCCTCCCCTTTATAATAAAGAATAATTTTTTNNNNNNAAAAAAAAAAA
AAAAACATTCTTTTTTTCCTTCTCTTTTTANNATTATAAAAAAAAAAAAA
AATAACACCCTCTTTTCTTTGGGGTGGTTGGTGGTGGGGTGGG

TTTTTTTTCTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGGAACTGAGGT
ATGTACCAAGAACAGCCCTCTCCTCTGTAACTGTTCTAGCCTGGAACACT
CAGTCTCATTTGAGGTTTGGGGCGGGGCTACGTTCCCAGGACTCGGGAGG
CCAGCATCACATAGTCTGTCCCTGGACCTAAAGCTACATTTCATGACTAG
AGTCAAGCAGAGGTTGCCATTGTCCAGCCAGACCCTGCTCATTGGATGAA
TACTGACCTGCCCAGTTGAGGTGGCCCAGGACGGGCAAGGAATTATGGAG
CCATGAGGACAGAGAGCTGCTCATTCTGGAGTTTAGTTGGAGCTCCCCAC
CAGCCGGAAGCAGAAAACCCTAGTGCAACACTAGCTGCAGGCTCTGCAGA
TTAGAATGCAACCCAGGGCAGAGCCTCCCTACAGTCCCACTTGTTGAAAA
CGAGTTTCTTTCTTTCTCTTACTTTTGTTTTTTGTTGTTGCTTTGTTTTG
TTTTGGTTTGAGTTTTGTTTTTCCAGACAGGATTTCTCTTGTGTTTCTAG
GCTGTCCTAGAACTTGCTCTGTAGACCAAACTCACAGAGGTCCACCTGCC
TGTCTCCCAAGTGTTGAGATTAAAGGTGNGCACCACTTTGCCAGCTTGCT
AACTTTTTCTTTTTTTAACGAGTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_j01.g1 MSMg01no506_j01.g1 CHROMAT_FILE:
MSMg01no506_j01.g1 PHD_FILE: MSMg01no506_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:49 2005
         (542 letters)



>mm_chr1_60055248_60056189
          Length = 942

 Score = 1009 bits (522), Expect = 0.0
 Identities = 537/542 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaggaactgaggtatgtaccaagaacagccctctcctctgtaactgttctagcctgga 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aggaggaactgaggtatgtaccaagaacagccctctcctccgtaactgttctagcctgga 260

                                                                       
Query: 61  acactcagtctcatttgaggtttggggcggggctacgttcccaggactcgggaggccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactcagtctcatttgaggtttggggcggggctacgttcccaggactcgggaggccagc 320

                                                                       
Query: 121 atcacatagtctgtccctggacctaaagctacatttcatgactagagtcaagcagaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcacatagtctgtccctggacctaaagctacatttcatgactagagtcaagcagaggtt 380

                                                                       
Query: 181 gccattgtccagccagaccctgctcattggatgaatactgacctgcccagttgaggtggc 240
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 381 gccattgtccagccagaccctgctcattggatgaatactgacccacccagttgaggtggc 440

                                                                       
Query: 241 ccaggacgggcaaggaattatggagccatgaggacagagagctgctcattctggagttta 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ccaggacgggcaaggaattatggagccatgaggacagagagctgctcactctggagttta 500

                                                                       
Query: 301 gttggagctccccaccagccggaagcagaaaaccctagtgcaacactagctgcaggctct 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttggagctccccaccagcaggaagcagaaaaccctagtgcaacactagctgcaggctct 560

                                                                       
Query: 361 gcagattagaatgcaacccagggcagagcctccctacagtcccacttgttgaaaacgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagattagaatgcaacccagggcagagcctccctacagtcccacttgttgaaaacgagt 620

                                                                       
Query: 421 ttctttctttctcttacttttgttttttgttgttgctttgttttgttttggtttgagttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctttctttctcttacttttgttttttgttgttgctttgttttgttttggtttgagttt 680

                                                                       
Query: 481 tgtttttccagacaggatttctcttgtgtttctaggctgtcctagaacttgctctgtaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtttttccagacaggatttctcttgtgtttctaggctgtcctagaacttgctctgtaga 740

             
Query: 541 cc 542
           ||
Sbjct: 741 cc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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