Query= MSMg01no506_j22.b1 MSMg01no506_j22.b1 CHROMAT_FILE:
MSMg01no506_j22.b1 PHD_FILE: MSMg01no506_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:53 2005
(585 letters)
>mm_chr1_32353977_32354961
Length = 985
Score = 1050 bits (543), Expect = 0.0
Identities = 572/585 (97%), Gaps = 8/585 (1%)
Strand = Plus / Plus
Query: 5 gaattccaaaagga---ttgccac-ttcatgaggatatagtataggcttggatcatagac 60
|||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaaggagggt----accttcatgaggatatagtataggcttggatcatagac 260
Query: 61 taaaagatttgtgagcaagaacctcttcattgatagcaattattggttgaaagaaacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 taaaagatttgtgagcaagaacctcttcattgatagcaattattggttgaaagaatcact 320
Query: 121 gggttccctggtggatgagaatcatgccactgaaaactgtgcttatggagaaagtttgga 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gggttccctggtggatgagaatcatgccactgaaaactgtgcgtatggagaaagtttgga 380
Query: 181 cttttacaatgtcttgcagggagttataaattgcttgggcttactgcacaggattcaggc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cttttacaatgtcttgcagggagttataaattgcttgggcttactgcgcaggattcaggc 440
Query: 241 tccaattgacatttattatgtggtgcttgaagccaatgggataaacaaggtcacttacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaattgacatttattatgtggtgcttgaagccaatgggataaacaaggtcacttacag 500
Query: 301 aatttaagaaggtcacactcagtctcatgaggatactggtatttagagttcaaatcttta 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 501 aatttaagaaggtcacactcagtctcatgagaatactggtatttagagttcaagtcttta 560
Query: 361 cagagcagtcaagtaagataagaacagaaaaatgtccatcaattttagcaattttgaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagcagtcaagtaagataagaacagaaaaatgtccatcaattttagcaattttgaagt 620
Query: 421 cattcttaacctttgccagagcgttttaaacacatacggtgaaaagggcagacacaaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattcttaacctttgccagagcgttttaaacacatacggtgaaaagggcagacacaaagg 680
Query: 481 gggaggcaatcaatgagtggaggtgatgttgtttggtgtgccctgcatgctctcagggct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggaggcaatcaatgagtggaggtgatgttgtttggtgtgccctgcatgctctcagggct 740
Query: 541 caaaagggcacttgatctgcaaggaacatatgctgtttttttgta 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaaagggcacttgatctgcaaggaacatatgctgtttttttgta 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_j22.g1 MSMg01no506_j22.g1 CHROMAT_FILE:
MSMg01no506_j22.g1 PHD_FILE: MSMg01no506_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:53 2005
(587 letters)
>mm_chr1_32488187_32489173
Length = 987
Score = 1081 bits (559), Expect = 0.0
Identities = 580/587 (98%)
Strand = Plus / Minus
Query: 1 tgttaatattttcatatgtgtgataacaaaatcataataaagcttcaggtaaatgatgaa 60
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tgttaatattttcacatatgtgataacaaaatcataataaagcttcaggtaaatgatgaa 728
Query: 61 tggccatcacatgacataaacagcattgactcagaagagccattattaaatggagcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tggccatcacatgacataaacagcattgactcagaagagccattattaaatggagcaaat 668
Query: 121 atcaattgacagagaaattatatgtggacaaatccacttggcatataatattggatggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atcaattgacagagaaattatatgtggacaaatccacttggcatataatattggatggaa 608
Query: 181 ttgtttgagaaacaaattttaattctgaaaattcctactaattataaactaaattcatac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttgtttgagaaacaaattttaattctgaaaattcctactaattataaactaaattcatag 548
Query: 241 tcaaaataacatgtataaagtaatggatgtaactttttcataaagaagaaatttgcatgc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcaaaataacatggataaagtaatggatgtaactttttcataaagaagaaatttgcatgc 488
Query: 301 aaatttgctaaaaataaaacaaaaataaaacctttctatatttgtaattttgctgttttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaatttgctaaaaataaaacaaaaataaaacctttctatatttgtaattttgctgttttc 428
Query: 361 tttaagaaaaacattacaacaaaggtactgtgataattctttatgtcatgaaacaaaaca 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 427 tttaagaaaaacattacaacaaaggcactgtgataattctttatgtcatgaaacaaaaca 368
Query: 421 cacaaagctaataggtaggcccttcagaaattagttttgaatcactgttacaaaaagttt 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cacaaagctaatagctaggcccttcagaaattagttttgaatcactgttacaaaaagttt 308
Query: 481 ttaaacctagatgttaaagtgtgatgtgagaaagataataaacatctggccccttctggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttaaacctagatgttaaagtgtgatgtgagaaagataataaacatctggccccttctggt 248
Query: 541 ggtttctggagaaattacaagtatgcatattcagatgtttagctagt 587
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggtttttggagaaattacaagtatgcatattcagatgtttagctagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
