BAC Information

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BAC

Clone NameMSMg01-506K05
Chromosome1 (Build37)
Map Location 70,895,018 - 70,895,237
singlet/doubletsinglet
Overlap geneA830006F12Rik
Upstream geneSpag16, LOC100043210
Downstream geneEG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506K05.T7 (MSMg01no506_k05.b1)MSMg01-506K05.TJ (MSMg01no506_k05.g1)
ACCAG580984AG580985
length728745
length of high quality
(start - end)
220 (351 - 570)553 (84 - 636)
definitionCHROMAT_FILE: MSMg01no506_k05.b1 PHD_FILE: MSMg01no506_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:55 2005CHROMAT_FILE: MSMg01no506_k05.g1 PHD_FILE: MSMg01no506_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAATACCTATAATTGCGGCGCTAAACGACTCACAATTTCGTACCTGCG
CGGAANCNGANGAATTACGNCACTCGGGAGNGCCGGACNANNGCCAGGNA
GAAGCAAGNAGAAANNAGATTCNACGCCCANANCAGNNNAGAANAAACNA
ANANGNACANNGANGGGNANGNACANAGCCACCACCAAACAGAAGGCGGA
ANAACAGCCCGCCCCACCCAAAGAACACNNCCCCAANAAAACANCCNANC
CCCTTCTTTTGTCTTTCTTAATATATGTCACTATGTCAATTTTGACACTC
TGTTTTGCTGACTTTAAATTACTTTTTTTTTTCGAAGCGGCTAAGNGGGN
GAACCTGGGATTACTTCTGTCAAAAATATCCACAGTTGTCTGTATTGTTT
GAGAGAGGAATTAGCTGTCTATACCTTTTGTACAACTGACATTAAAACTT
CCACTGGGGAAAAAGTCTCATAATTTCTAAACTGAGTGCTTTTAAATTGT
ATCTATAGATCTTCCTTGCATGAATGAATAGCTGGCATTAAATCTTTCAA
TTCTTGTTGCAAGGCTTCCTCACTGCATCTTTTAACCTTATCATCAATTA
AATTGCCAAGAATGCTATGTAGTGGCATACTCCTTGTTATGCCACACTGC
GTGGCTTGTTTTTTTACTATCTCGCTTAACTGATTAATACAGTGCTTTTA
TTGCATATAGTGCCTATTTCTCTTGCGT
AGGTGCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAATGGATATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAACCTAGGATATCCAAGATATAAGATA
CAATTTCCTAAACACATGAAACTCAAGAATAATGAAGACTGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_k05.b1 MSMg01no506_k05.b1 CHROMAT_FILE:
MSMg01no506_k05.b1 PHD_FILE: MSMg01no506_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:55 2005
         (220 letters)



>mm_chr1_70894818_70895437
          Length = 620

 Score =  426 bits (220), Expect = e-124
 Identities = 220/220 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacctgggattacttctgtcaaaaatatccacagttgtctgtattgtttgagagaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacctgggattacttctgtcaaaaatatccacagttgtctgtattgtttgagagaggaa 260

                                                                       
Query: 61  ttagctgtctataccttttgtacaactgacattaaaacttccactggggaaaaagtctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagctgtctataccttttgtacaactgacattaaaacttccactggggaaaaagtctca 320

                                                                       
Query: 121 taatttctaaactgagtgcttttaaattgtatctatagatcttccttgcatgaatgaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatttctaaactgagtgcttttaaattgtatctatagatcttccttgcatgaatgaata 380

                                                   
Query: 181 gctggcattaaatctttcaattcttgttgcaaggcttcct 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctggcattaaatctttcaattcttgttgcaaggcttcct 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)