Query= MSMg01no506_m04.b1 MSMg01no506_m04.b1 CHROMAT_FILE:
MSMg01no506_m04.b1 PHD_FILE: MSMg01no506_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:04 2005
(244 letters)
>mm_chr1_64583717_64584366
Length = 650
Score = 456 bits (236), Expect = e-133
Identities = 244/250 (97%), Gaps = 6/250 (2%)
Strand = Plus / Minus
Query: 1 ttctaaactcatagtttgcttgttgct------atctcaatcttttaactaaagctttta 54
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 360 ttctaaactcatagtttgcttgttgctatgtacatctcaatcttttaactaaagctttta 301
Query: 55 taaagtggagctaaaaataaggcagtttaaattaaacctcaacttccacttattaactag 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 taaagtggagctaaaaataaggcagtttaaattaaacctcaacttccacttattaactag 241
Query: 115 tccattacttttcactcagatgagtgttacttaaataaagtttgtgtttgagactaggtt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tccattacttttcactcagatgagtgttacttaaataaagtttgtgtttgagactaggtt 181
Query: 175 ttactatgtagcccttgctggaacttactttgtaaaacaaggctggccttgaatttagag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttactatgtagcccttgctggaacttactttgtaaaacaaggctggccttgaatttagag 121
Query: 235 atccagcagc 244
||||||||||
Sbjct: 120 atccagcagc 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 650
Length adjustment: 9
Effective length of query: 235
Effective length of database: 641
Effective search space: 150635
Effective search space used: 150635
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no506_m04.g1 MSMg01no506_m04.g1 CHROMAT_FILE:
MSMg01no506_m04.g1 PHD_FILE: MSMg01no506_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:04 2005
(376 letters)
>mm_chr1_64419394_64420169
Length = 776
Score = 710 bits (367), Expect = 0.0
Identities = 373/375 (99%)
Strand = Plus / Plus
Query: 1 tctgccacatgcagataaatataaggcactttggtgcttttaacacaatcccagagggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgccacatgcagataaatataaggcactttggtgcttttaacacaatcccagagggcc 260
Query: 61 tcctagaggagatgacttttaaggtagatatgatcagaaaagcaaagtgtggcagacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctagaggagatgacttttaaggtagatatgatcagaaaagcaaagtgtggcagacaat 320
Query: 121 cttagtaagcatgaagataatctagaaataaagggtcagtgacgacataggacatggtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagtaagcatgaagataatctagaaataaagggtcagtgacgacataggacatggtat 380
Query: 181 gatatgggtgccaccaggctggagcacaagctccatcaagggaagaatgaaagaatgcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatgggtgccaccaggctggagcacaagctccatcaagggaagaatgaaagaatgcac 440
Query: 241 aagtttcagtagacttcaggaagcctgctgatgcgtggaagaaacacagatacgttacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aagtttcagtagacttcaggaagcctgctgatgcgtggaagaaacacagatacattacct 500
Query: 301 ttggctcattcttcagagaaaactgctatgaaaacatctttgtgttcagtgtgttgatga 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 ttggctcattcttcagagaaaactgctaggaaaacatctttgtgttcagtgtgttgatga 560
Query: 361 taaagtaaccaggtt 375
|||||||||||||||
Sbjct: 561 taaagtaaccaggtt 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
