Query= MSMg01no506_n08.b1 MSMg01no506_n08.b1 CHROMAT_FILE:
MSMg01no506_n08.b1 PHD_FILE: MSMg01no506_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:09 2005
(359 letters)
>mm_chr1_102308990_102309749
Length = 760
Score = 634 bits (328), Expect = 0.0
Identities = 352/360 (97%), Gaps = 1/360 (0%)
Strand = Plus / Minus
Query: 1 gattacaagggtatgcagcactacctgctttttacac-agggttgcccaagatggaacta 59
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 560 gattacaagggtatgcagcactacctgctttttatacaagggttgcccaagatggaacta 501
Query: 60 aggtctccatgctttcttagttctgctccaggccttgcaggtccttagcattccattcat 119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 aggtctccatgctttcttagttctgctccaggccttgcagatccttagcattccattcat 441
Query: 120 gcacagcacatttgtttgtcttacaggaccaaagcaactccagattcgctccctgggtat 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 gcacagcacatttgttcgtcttacaggaccaaagcaactccagattcgctcccggggtac 381
Query: 180 tgtcactaatcagtgtgtgttgctatacatgtctccatgcatatctcgtagtttcaaaat 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 tgtcactaatcagtgtgtgttgctatacatgtctccatgcatatctcatagtttcaaaat 321
Query: 240 aactgaaagacatggactttttatgcaacactcaccagatgccattcctgagtgatccct 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 aactgaaagacatggactttttatgcagcactcaccagatgccattcctgagtgatccct 261
Query: 300 gcgtggataaagtgccttactagtgagctgatagctaaaaaaatccctcccctgatcagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcgtggataaagtgccttactagtgagctgatagctaaaaaaatccctcccctgatcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 760
Length adjustment: 9
Effective length of query: 350
Effective length of database: 751
Effective search space: 262850
Effective search space used: 262850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_n08.g1 MSMg01no506_n08.g1 CHROMAT_FILE:
MSMg01no506_n08.g1 PHD_FILE: MSMg01no506_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:10 2005
(604 letters)
>mm_chr1_102243983_102244982
Length = 1000
Score = 1064 bits (550), Expect = 0.0
Identities = 589/604 (97%), Gaps = 4/604 (0%)
Strand = Plus / Plus
Query: 1 aaacaaatccttcacagaagttatcctgatggattgctaggtgatccacaaacagtactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacaaatccttcacagaagttatcctgatggattgctaggtgatccacaaacagtactg 260
Query: 61 ttcatgatacactcttgagtttttgagtattctatgaccagaattaattgcttagggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatgatacactcttgagtttttgagtattctatgaccagaattaattgcttagggaac 320
Query: 121 aataatgacatactagattttctaagatttgtgagtgagaagtcatacctttttgtgtca 180
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 321 aataatgacatactagattttctaagattt----gtgagaagtcataactttttgtgtca 376
Query: 181 tactgtgtgtcccttcaatctaatattactaattcctgattgcttagtttacctctttat 240
||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||
Sbjct: 377 tactgtgtgtcccttcaatctaatactactaattcctgatggcttagttcacctgtttat 436
Query: 241 ttgtcccaaagataaactcccacaaaattgcagaaggactagacaagtaatgtctgtctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgtcccaaagataaactcccacaaaattgcagaaggactagacaagtaatgtctgtctc 496
Query: 301 tgccctttttaaatgttgtacagctatcagaaaagagaattcaagcaaaattctgcctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 497 tgccctttttaaatgttgtacagctatcagaaaagagaattcaagcaaaattctgcccgt 556
Query: 361 tatgtgaatgcagttcatagaaaggtacagttgaattaattaattttggcaaagatggaa 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 557 tatgtgaatgcagttcatagaaaggcacagttgaattaattaattttggcaaagatggaa 616
Query: 421 aaagcatgaggatcctcagaggtatggaagcatagtacatttgggagtagaggaccaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaagcatgaggatcctcagaggtatggaagcatagtacatttgggagtagaggaccaaga 676
Query: 481 ttgatttaccttctgatcttccagatttgagcatttatttctcagctactagaacaaact 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 677 ttgatttaccttctgatcttccagatttgagcatttatttctcagttactagaacaaact 736
Query: 541 attttaattctgcctgaatttttggaacatgagtgtttgttatgcttctttcgatacttg 600
|||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 737 attttaatcctgcctgaatttttggaacatgagtgtttggtatgcttcttttgatacttg 796
Query: 601 aaga 604
||||
Sbjct: 797 aaga 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1000
Length adjustment: 10
Effective length of query: 594
Effective length of database: 990
Effective search space: 588060
Effective search space used: 588060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
