Query= MSMg01no506_n16.b1 MSMg01no506_n16.b1 CHROMAT_FILE:
MSMg01no506_n16.b1 PHD_FILE: MSMg01no506_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:11 2005
(566 letters)
>mm_chr1_175272008_175272973
Length = 966
Score = 1094 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 1 cctgcctctgcctcccaagtgctgggattaaaggtatgtgccaccactgcccagctcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgcctctgcctcccaagtgctgggattaaaggtatgtgccaccactgcccagctcctc 260
Query: 61 ctggctctcttgaacacagattgtgaccatcattgactgtgagagcaacccgctgcaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggctctcttgaacacagattgtgaccatcattgactgtgagagcaacccgctgcaact 320
Query: 121 caacctctgagtgctggcattccagcatggctgcccttgttgggacctataggatgtctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacctctgagtgctggcattccagcatggctgcccttgttgggacctataggatgtctc 380
Query: 181 agcagagccaaggagaagccatggtttattcatgcctaacaaaattgtctggcacataga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagagccaaggagaagccatggtttattcatgcctaacaaaattgtctggcacataga 440
Query: 241 caggatctaatacgtatttttaaatgaacaaagaaagtgaacttgacactgactgagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggatctaatacgtatttttaaatgaacaaagaaagtgaacttgacactgactgagttc 500
Query: 301 actacctctcagtttcatctactctgtgagggagcttcgtagtgaaagcaatgcttgaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actacctctcagtttcatctactctgtgagggagcttcgtagtgaaagcaatgcttgaac 560
Query: 361 acaaaacatccctttgaaaggtcagtccaaacatggaaagggagcaacagaaacagtgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaaacatccctttgaaaggtcagtccaaacatggaaagggagcaacagaaacagtgag 620
Query: 421 gagtgggggtcatattttggcagaggggaaaaaaagcctgagacaatatagatgggtctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagtgggggtcatattttggcagaggggaaaaaaagcctgagacaatatagatgggtctg 680
Query: 481 tgtgggaataatgacatctgtcattgatgccaaaaggctgctttggagactgggtccaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgggaataatgacatctgtcattgatgccaaaaggctgctttggagactgggtccaga 740
Query: 541 tggtggcttagaacaatgtgaccaga 566
||||||||||||||||||||||||||
Sbjct: 741 tggtggcttagaacaatgtgaccaga 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_n16.g1 MSMg01no506_n16.g1 CHROMAT_FILE:
MSMg01no506_n16.g1 PHD_FILE: MSMg01no506_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:11 2005
(466 letters)
>mm_chr1_175401168_175402033
Length = 866
Score = 837 bits (433), Expect = 0.0
Identities = 436/437 (99%), Gaps = 1/437 (0%)
Strand = Plus / Minus
Query: 1 atttactatggaatagaagatagaacggggaggatggaagtggtggtctacggacaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atttactatggaatagaagatagaacggggaggatggaagtggtggtctacggacaattt 447
Query: 61 accaaactgtactgtgagcctggggataagcttagcctcttctgctttgaactgagctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 accaaactgtactgtgagcctggggataagcttagcctcttctgctttgaactgagctcc 387
Query: 121 agtttggatatgtggcagctgagatctgtgaggcacagttatatgcaggtgtgttctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agtttggatatgtggcagctgagatctgtgaggcacagttatatgcaggtgtgttctcta 327
Query: 181 aggcatcatagtatttcctaacaaccacatttagtactctggtaagatctggctataaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggcatcatagtatttcctaacaaccacatttagtactctggtaagatctggctataaca 267
Query: 241 gaaaggaaattaaattttaagcattaataattgaacattttcttatcatagttttaagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaaaggaaattaaattttaagcattaataattgaacattttcttatcatagttttaagaa 207
Query: 301 tagggctgtttttctttgtttttttttgttctttttgcttttgttttgttttgtttaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tagggctgtttttctttgtttttttttgttctttttgcttttgttttgttttgtttaaaa 147
Query: 361 ataatttttccatagaatatatatatatatatatatatatatatatatatatatatatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ataatttttccatagaatatatatatatatatatatatatatatatatatatatatatat 87
Query: 421 atantatatatataggg 437
||| |||||||||||||
Sbjct: 86 ata-tatatatataggg 71
Score = 103 bits (53), Expect = 3e-26
Identities = 56/57 (98%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 378 tatatatatatatatatatatatatatatatatatatatatatatantatatatata 434
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 74 tatatatatatatatatatatatatatatatatatatatatatata-tatatatata 129
Score = 103 bits (53), Expect = 3e-26
Identities = 56/57 (98%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 377 atatatatatatatatatatatatatatatatatatatatatatatantatatatat 433
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 75 atatatatatatatatatatatatatatatatatatatatatatata-tatatatat 130
Score = 93.5 bits (48), Expect = 3e-23
Identities = 57/62 (91%), Gaps = 5/62 (8%)
Strand = Plus / Plus
Query: 386 tatatatatatatatatatatatatatatatatatatantatatatatagggatatatat 445
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 74 tatatatatatatatatatatatatatatatatatata-tatatatata----tatatat 128
Query: 446 at 447
||
Sbjct: 129 at 130
Score = 93.5 bits (48), Expect = 3e-23
Identities = 57/62 (91%), Gaps = 5/62 (8%)
Strand = Plus / Plus
Query: 404 tatatatatatatatatatantatatatatagggatatatatatatatatatatatatat 463
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 74 tatatatatatatatatata-tatatatata----tatatatatatatatatatatatat 128
Query: 464 at 465
||
Sbjct: 129 at 130
Score = 91.6 bits (47), Expect = 1e-22
Identities = 56/61 (91%), Gaps = 5/61 (8%)
Strand = Plus / Plus
Query: 406 tatatatatatatatatantatatatatagggatatatatatatatatatatatatatat 465
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 74 tatatatatatatatata-tatatatata----tatatatatatatatatatatatatat 128
Query: 466 a 466
|
Sbjct: 129 a 129
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 80
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 26
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
