Query= MSMg01no506_p19.b1 MSMg01no506_p19.b1 CHROMAT_FILE:
MSMg01no506_p19.b1 PHD_FILE: MSMg01no506_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:22 2005
(666 letters)
>mm_chr1_166347034_166348094
Length = 1061
Score = 1137 bits (588), Expect = 0.0
Identities = 646/676 (95%), Gaps = 19/676 (2%)
Strand = Plus / Plus
Query: 5 gaattcctaggaaaatgccactccttatcttactgtggctatgccgggaagagtgcacag 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattcctaggaaaatgaaactccttatcttactgtggctatgccgggaagagtgcacag 250
Query: 65 tgagcctttctgagcaagtccgaagtctgtgcgtgcacgggagtgcttagctgagctttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgagcctttctgagcaagtccgaagtctgtgcgtgcacgggagtgcttagctgagctttt 310
Query: 125 catagttgtgaggtctgaactcgagttcaaaggcaaaagttgaaagtcttgaattggtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 catagttgtgaggtctgaactcgagttcaaaggcaaaagttgaaagtcttgaattggtaa 370
Query: 185 agtaaaagttagaactcaaatcttcttatgcactgtggccttcatcgaggtctaaagtag 244
||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 371 agtaaaagttagaacgcgaatcttcttatgcactgtggccttcattgaggtctaaagtag 430
Query: 245 gagggaggccagagggcataaggatcc--------------gaagaggatgctctgagtt 290
||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 431 gagggaggccagagggcataaggatcccaggcacaggatccgaagaggatgctctgagtt 490
Query: 291 taaaatcccacattctcccccttccaacttcatgacaaactatctaactcagactaactt 350
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 491 taaaatcccacattctcccccttccaacttcatgacaaacta----actcagactaactt 546
Query: 351 tctccacgagaagaatagaaataatgacatttcaccgtaagaattgtgcaaggctatgtc 410
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 547 tctccacgagaagaatagaaataatgacatttcaccataagaattgtgcaaggctatgta 606
Query: 411 ataaggcacttatgtctactgaccataagaatcagtggagtttcaggcaaaagtcagaac 470
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ata-ggcacttatgtctactgaccataagaatcagtggagtttcaggcaaaagtcagaac 665
Query: 471 acactcaaggtatcacaaggagacaatgactctaaccaaggaacatcagtgcaaaagtga 530
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gcactcgaggtatcacaaggacacaatgactctaaccaaggaacatcagtgcaaaagtga 725
Query: 531 ggaagttaacaacactcagaattctcatgtcactgtcttctggatccagatgtgggcagc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggaagttaacaacactcagaattctcatgtcactgtcttctggatccagatgtgggcagc 785
Query: 591 tgttttgccatcacctcggccacaactgccaaccaaactggctctcagaaccacagtctg 650
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgttttgccaccacctcggccacaactgccaaccaaactggctctcagaaccacagtctg 845
Query: 651 gtaacaaagctgtcag 666
||||||||||||||||
Sbjct: 846 gtaacaaagctgtcag 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1061
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1051
Effective search space: 689456
Effective search space used: 689456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_p19.g1 MSMg01no506_p19.g1 CHROMAT_FILE:
MSMg01no506_p19.g1 PHD_FILE: MSMg01no506_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:22 2005
(585 letters)
>mm_chr1_166496054_166497036
Length = 983
Score = 986 bits (510), Expect = 0.0
Identities = 546/558 (97%), Gaps = 3/558 (0%)
Strand = Plus / Minus
Query: 29 ccattaagagatgttggctaaagaaaacacacagacacattcatgccacacacatccaaa 88
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 983 ccattaagagatgttggctaaagaaaacacacagacacatttatgccacacacatccaaa 924
Query: 89 cacacacatatatacgtgcaattgtatatatgagacatacatacatttgcatgggtagaa 148
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 923 cacacacatatatacgtgcaattgtatatatgagacatgcatacatttgcatgggtagaa 864
Query: 149 ctgtatatcatcatggtaaatgaaataatccaaacctaggaagacaaggattacattttc 208
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 863 ctgtatatcatcatggtaaatgaaataatccaaacctaggaagacaagggttacattttc 804
Query: 209 tctcaatatgtggaa-ttatatttaagtggagggggacaggaaggaatttaatgtagtca 267
||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 803 tctcaatatgtggaatttacatttaagtggagggggacaggaagaaatttaatgtagtca 744
Query: 268 agagattcttggattagggaggatattgccttagaacccagagcccatgtcaaggaactc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 743 agagattcttggattagggaggatattgccttagaacccagagcccatgtcaaagaactc 684
Query: 328 agaggcacaaagggctcttggaaggatggagaggaagaacatgggaataatgaacagaga 387
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 683 agaggcacaaagggctcttggaagggtggagagaaagaacatgggaataatgaacagaga 624
Query: 388 gagtatatactgagtgccatttttatcaccaagggtgggtgactcttatttataattttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gagtatatactgagtgccatttttatcaccaagggtgggtgactcttatttataattttc 564
Query: 448 ttttctctggtctgaatattttaagaggccttttccttatttgaggaggaatcataaaca 507
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 563 ttttctctggtctgaatattttaagaggccttttcc-tatttgaggaggaatcgtaaaca 505
Query: 508 cgcattttctccaagtcaaacatcccagtgatttatatgcttgtgggtagctgctgcaca 567
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 cgcattttctccaagtcaaacatcccagtga-ttatatgcttgtgggtagctgctgcaca 446
Query: 568 ggcttggagcatgaggag 585
||||||||||||||||||
Sbjct: 445 ggcttggagcatgaggag 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 983
Length adjustment: 10
Effective length of query: 575
Effective length of database: 973
Effective search space: 559475
Effective search space used: 559475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
