BAC Information

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BAC

Clone NameMSMg01-507A02
Chromosome1 (Build37)
Map Location 185,764,315 - 185,764,688
singlet/doubletsinglet
Overlap genenone
Upstream geneSusd4, Tlr5, EG666649
Downstream gene1700056E22Rik, Dusp10, EG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507A02.T7 (MSMg01no507_a02.b1)MSMg01-507A02.TJ (MSMg01no507_a02.g1)
ACCAG581262AG581263
length740753
length of high quality
(start - end)
583 (42 - 624)641 (76 - 716)
definitionCHROMAT_FILE: MSMg01no507_a02.b1 PHD_FILE: MSMg01no507_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:23 2005CHROMAT_FILE: MSMg01no507_a02.g1 PHD_FILE: MSMg01no507_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATC
CGCGGAATTCTTCACTGAAGCCCACTGAACACTGCCAGTTCTCCAGAAGT
GAGCAAGTTGCTGTGTCGCCACATGTTCCCTATCTCTACATATCCTGGAT
CATTCTCCAGCTGTGTCAGAGGCTTCTGGAAGGCAAGAATCTATTTCTCA
TAGGCTTTTGTACTTCCTAAGAGCAACCTTTACATTTTTATTCAATTGAT
ATTATCCAGATAAGATGAAAACAAGACAACTCAAAATCCCACCTGGAGCC
AGGTGTGGTGGCGCATGCCTTTAATCCCAGCACTCAGGAGGCAGACACAG
GCAGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGCTCCAGGA
CAGCCAGGGCTTCACAGAGAAACCCTGTCTCAAAAACAAAACAAAACAAA
ACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAACACAA
AAGAATCCCACCTGGATGCCTGTAGATCGTGTTCATATATGATACTGTCT
CCTGTCTCATCTTCTCAAACATCATGTTTCTGAGGATATAAGGTTGGGAA
GAGATGCTTGTTGTGGAAGCTGATGCCCATGGGATGGGAAGAGAAGAGTC
AGTGAAGCAATGCATAAGAATAAACGGGAGAGGAGATTAGAAGCTTGGAC
CACTTCAGCAGCTTTACATTGTCCTTGGACTTTGGGCAGA
NNCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTG
AGAAACACCTGAAAAAAATGTAAGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAATCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGTGGTTCCTTAGAAAATTGGACATGGTACTACTGGAGGATCC
AGGAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGGGAAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATTAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACTTATGATACCCAAGATATAAGATACAATTTGC
TAAATGCATGAAACTCAAGAAGAATGAAGACCAAAGTGTGGACCCTTTAT
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_a02.b1 MSMg01no507_a02.b1 CHROMAT_FILE:
MSMg01no507_a02.b1 PHD_FILE: MSMg01no507_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:23 2005
         (583 letters)



>mm_chr1_185764315_185765297
          Length = 983

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/374 (96%), Gaps = 12/374 (3%)
 Strand = Plus / Minus

                                                                       
Query: 13  ggaattcttcactgaagcccactgaacactgccagttctccagaagtgagcaagttgctg 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggaattcttcactgaagcccactgaacactgccagttctccagaagtgagcaagttgctg 315

                                                                       
Query: 73  tgtcgccacatgttccctatctctacatatcctggatcattctccagctgtgtcagaggc 132
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 314 tgtcgccacatgttccctatctctacatattttggatcattctccagctgtgtcagaggc 255

                                                                       
Query: 133 ttctggaaggcaagaatctatttctcataggcttttgtactt-c-------ct----aag 180
           |||||||||||||||||||||||||||||||||||||||||| |       ||    |||
Sbjct: 254 ttctggaaggcaagaatctatttctcataggcttttgtacttacttttgtacttaccaag 195

                                                                       
Query: 181 agcaacctttacatttttattcaattgatattatccagataagatgaaaacaagacaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agcaacctttacatttttattcaattgatattatccagataagatgaaaacaagacaact 135

                                                                       
Query: 241 caaaatcccacctggagccaggtgtggtggcgcatgcctttaatcccagcactcaggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 caaaatcccacctggagccaggtgtggtggcgcatgcctttaatcccagcactcaggagg 75

                                                                       
Query: 301 cagacacaggcagatctctgagttcgaggccagcctggtctacagagtgagctccaggac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  cagacacaggcagatctctgagttcgaggccagcctggtctacagagtgagctccaggac 15

                         
Query: 361 agccagggcttcac 374
           ||||||||||||||
Sbjct: 14  agccagggcttcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)