Query= MSMg01no507_g17.b1 MSMg01no507_g17.b1 CHROMAT_FILE:
MSMg01no507_g17.b1 PHD_FILE: MSMg01no507_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:57 2005
(669 letters)
>mm_chr1_43145367_43146434
Length = 1068
Score = 1243 bits (643), Expect = 0.0
Identities = 662/672 (98%), Gaps = 7/672 (1%)
Strand = Plus / Minus
Query: 1 ctactctgtggggcttaagttttatagaatataagatgctgcaatagttgtatgtaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ctactctgtggggcttaagttttatagaatataagatgctgcaatagttgtatgtaacat 809
Query: 61 ctaccagtggtgtcatatgctttcagtcatttagatgaacatgtttggtacagacacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ctaccagtggtgtcatatgctttcagtcatttagatgaacatgtttggtacagacacata 749
Query: 121 taacagcttagcgtgatacacattatatcatgtgtgccaaatgctttcgatatggagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 taacagcttagcgtgatacacattatatcatgtgtgccaaatgctttcgatatggagttc 689
Query: 181 agttcgatatgatgtgaaactcatggattagaggacaacttatgtttttatatttttatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agttcgatatgatgtgaaactcatggattagaggacaacttatgtttttatatttttatc 629
Query: 241 atttgtat---ctattttagctaggagtagttaggtgtagatgtgtgccagggtaataac 297
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atttgtatcagcaa----agctaggagtagttaggtgtagatgtgtgccagggtaataac 573
Query: 298 attttaaaccataactgtcttctcccctctatcttctccctccatatatctctgtcaggt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 attttaaaccataactgtcttctcccctctatcttctccctccatatatctctgtcaggt 513
Query: 358 cactgaacaggccagtagtctatgactatctattttgttttatttatttttcgtgctcag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cactgaacaggccagtagtctatgactatctattttgttttatttatttttcgtgctcag 453
Query: 418 cttttgctgtctcttccatacttgtgttgatcaagtgttgcctggttacaagctaatata 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cttttgctgtctcttccatacttgtgttgatcaagtgttgcctggttacaagctaatata 393
Query: 478 tttgttgttggcttccagcaaatctcaggattgtcactaaactgggtgcttttcagcaag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttgttgttggcttccagcaaatctcaggattgtcactaaactgggtgcttttcagcaag 333
Query: 538 aacaacttaggccaggtaaatatatatcctgatttgacgggaatgtatctgagtctcagc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aacaacttaggccaggtaaatatatatcctgatttgacgggaatgtatctgagtctcagc 273
Query: 598 aagacaggtggagctgtagaattcatctttgggagtcccagcanggagctaagggcccca 657
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 272 aagacaggtggagctgtagaattcatctttgggactcccagcagggagctaagggcccca 213
Query: 658 ctgatctcagga 669
||||||||||||
Sbjct: 212 ctgatctcagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_g17.g1 MSMg01no507_g17.g1 CHROMAT_FILE:
MSMg01no507_g17.g1 PHD_FILE: MSMg01no507_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:58 2005
(629 letters)
>mm_chr1_42946934_42947963
Length = 1030
Score = 1129 bits (584), Expect = 0.0
Identities = 619/631 (98%), Gaps = 3/631 (0%)
Strand = Plus / Plus
Query: 1 caggccagcaaagaaagttagcaagaccctgtctcaaagtttaaaaaaagggggtggggc 60
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 201 caggccagcaaagaaagttagcaagaccctatctcaaagtttaaaaaaggggggtggggt 260
Query: 61 ggtatagaatgctttagtgaatactgtttcctgttcctgtacatctagctcatcgattt- 119
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ggtatagaatgctttagtgaatactgtttcctgttcctgtacagctagctcatcgatttt 320
Query: 120 ggggacataatgagatttgtgaggaagaatgaccatgagagaaacatgtatcgcatttgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggacataatgagatttgtgaggaagaatgaccatgagagaaacatgtatcgcatttgt 380
Query: 180 ccctatgaggaaatgaagcatactggggggcaagtatggaatgaaggcacccttggatct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctatgaggaaatgaagcatactggggggcaagtatggaatgaaggcacccttggatct 440
Query: 240 gtggggtgctcct-atgtcacacgctaagggctcctttgcaggtctgttgcatacccaac 298
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggggtgctc-tcatgtcacacgctaagggctcctttgcaggtctgttgcatacccaac 499
Query: 299 gttgctgtgtacataatgactcctcagtaaaaatcctgttagcaagatgtacatttataa 358
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttgctgtggacataatgactcctcagtaaaaatcctgttagcaagatgtacatttataa 559
Query: 359 tgaaaacctgtaaaacaatcttgacacaacttcttaaacaattaaaagtggttttaagaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaaaacctgtaaaacaatcttgacacaacttcttaaacaattaaaagtggttttaagaa 619
Query: 419 ataagagacttcctgggttttttggaatggctctgaagagctgcctccacctgagctgcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ataagagacttcctgggttttttggaatggctctgaagagctgcctccacctgagctgcc 679
Query: 479 ttctttattgaaactttatggttgcattccctcaggagccacttaagcaggaagacgcgc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttctttattgaaactttatggttgcattccctcaggagccacttaagcaggaagacgcgc 739
Query: 539 gtgcttctcaggcgtgagaagctgcagcctaagtttcaagaacagaagatgggaaagagc 598
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 740 gtacttctcaggcgtgagaagctgcagcctaggtttcaagaacagaagatgggaaagagc 799
Query: 599 anggacagaaatttcctggaaatgctgagca 629
| |||||||||||||||||||||||||||||
Sbjct: 800 agggacagaaatttcctggaaatgctgagca 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space: 631380
Effective search space used: 631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
