Query= MSMg01no507_g24.b1 MSMg01no507_g24.b1 CHROMAT_FILE:
MSMg01no507_g24.b1 PHD_FILE: MSMg01no507_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:59 2005
(583 letters)
>mm_chr1_55977695_55978676
Length = 982
Score = 1073 bits (555), Expect = 0.0
Identities = 574/581 (98%), Gaps = 5/581 (0%)
Strand = Plus / Minus
Query: 5 gaattccagtaccaat-atctgttctaatgtatcttgtttacaggcatttctgattataa 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattccagtaccaataat-tgttctaatgtatcttgtttacaggcatttctgattataa 724
Query: 64 aacacagaacaagccggaggggggggggggctgagaaag-tgaaggaccaaagattcgtt 122
|||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct: 723 aacacagaacaagccgga--gtggggggggctgagaaagatgaaggaccaaagattcgtt 666
Query: 123 agcaatctcatagtaaaaggccatcataatccataaaccattgacccaatagagagaaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agcaatctcatagtaaaaggccatcataatccataaaccattgacccaatagagagaaat 606
Query: 183 ttcccttttactttaaatcaattagcatttatacgtgagtcattccaaagccatcatatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttcccttttactttaaatcaattagcatttatacgtgagtcattccaaagccatcatatt 546
Query: 243 tataagccattatagtatatacctaatgtattgatcagcacacagtcagttattaattaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tataagccattatagtatatacctaatgtattgatcagcacacagtcagttattaattaa 486
Query: 303 tggcatcatgactttcaaacctcttggaagttttagtgcttcaaggctgcacagcacctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tggcatcatgactttcaaacctcttggaagttttagtgcttcaaggctgcacagcacctg 426
Query: 363 tcagaggcaagcactgaacacctcacaggcttcatgccctgagtgaagcatggtgctcac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcagaggcaagcactgaacacctcacaggcttcatgccctgagtgaagcatggtgctcac 366
Query: 423 agggtctctgcattgattctactacattagtcagcctacagtgcacactgtgcctctaca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agggtctctgcattgattctactacattagtcagcctacagtgcacactgtgcctctaca 306
Query: 483 agagaccatcacctcccataagtaaacattatactctcaagtgacacggtcttgacatta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agagaccatcacctcccataagtaaacattatactctcaagtgacacggtcttgacatta 246
Query: 543 tctacataaagaagggtggcacactaacttctcaacacata 583
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 245 tctacataaagaagggtggcacacaaacttctcaacacata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 982
Length adjustment: 10
Effective length of query: 573
Effective length of database: 972
Effective search space: 556956
Effective search space used: 556956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_g24.g1 MSMg01no507_g24.g1 CHROMAT_FILE:
MSMg01no507_g24.g1 PHD_FILE: MSMg01no507_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:59 2005
(505 letters)
>mm_chr1_55959349_55960253
Length = 905
Score = 673 bits (348), Expect = 0.0
Identities = 445/508 (87%), Gaps = 52/508 (10%)
Strand = Plus / Plus
Query: 1 tgtcattgttacctcctcctttgtactcatcaataattacattgctctcagtaatctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcattgttacctcctcctttgtactcatcaataattacattgctctcagtaatctctg 260
Query: 61 cgctcaatgggagaggtaatatttcttaatggctttatacttctacatatcagtggggaa 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 cgctcaatgggagaggtaatatttcttgatggctttatacttctacatatcagtggggaa 320
Query: 121 aagacttaaaagacaacttttgatgtgctagtctatgaaaattttcatgaggaaatacaa 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacttaaaatacaacttttgatgtgctagtctatgaaaattttcatgaggaaatacaa 380
Query: 181 gtttaagatagtagagtcagccaggccttggtgtcgcacgcctttaatcttagcacttgg 240
| || |||| ||||||| || |||||||||||||||||||||
Sbjct: 381 g-------------------ccgggccgtggtgtcacatgcctttaatcttagcacttgg 421
Query: 241 gaggcagaggcaggtggatttctgagttccaggccagcttggtctacagagtgagttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaggcagaggcaggtggatttctgagttccaggccagcttggtctacagagtgagttcca 481
Query: 301 ggacagccagggctatacagagaaaccctgtctcaaaaacaaaacaaaaaacaaacaaag 360
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agacagctagggctatacagagaaaccctgtctcaaaaacaaaacaaa------------ 529
Query: 361 aaaaacaaacaaacaaataaacaaacaagacaatagagtctccaatatg---gactttga 417
|||||||||||| |||||||||||||||| | || ||||||||
Sbjct: 530 -----caaacaaacaaa--------caagacaatagagtct----t-tgaaagactttga 571
Query: 418 aaggccaaatgagatactgttataatgtagggtcaggtacttgaacaagttatttatggt 477
|||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 572 aaggccaaatgagatagtgttatattgtagggtcaggtacttgaacaaattatttatggt 631
Query: 478 cccattatgttatcttataatttatgaa 505
||||||||||||||||||||||||||||
Sbjct: 632 cccattatgttatcttataatttatgaa 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
