Query= MSMg01no507_j06.b1 MSMg01no507_j06.b1 CHROMAT_FILE:
MSMg01no507_j06.b1 PHD_FILE: MSMg01no507_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:10 2005
(681 letters)
>mm_chr1_133812082_133813161
Length = 1080
Score = 1265 bits (654), Expect = 0.0
Identities = 670/678 (98%), Gaps = 7/678 (1%)
Strand = Plus / Minus
Query: 7 gaattcaaactctctcc---tttgtcttccctagtgtgtgccaccatgtccaacccccaa 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gaattcaaactctctccaca--tgtcttccctagtgtgtgccaccatgtccaacccccaa 753
Query: 64 atgctatggtttaacaactcacccaccacagatttcaagtgccttcttcatgctctagtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 atgctatggtttaacaactcacccaccacagatttcaagtgccttcttcatgctctagtt 693
Query: 124 gatctcttccaaacaaaagatgaagtaaaatctgcccagtaatacccacaaggaaattta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gatctcttccaaacaaaagatgaagtaaaatctgcccagtaatacccacaaggaaattta 633
Query: 184 acagtgtggctcataagtgatagaggagaataaacgagggctatgcccttgctctactaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 acagtgtggctcataagtgatagaggagaataaacgagggctatgcccttgctctactaa 573
Query: 244 ttctactttacgctgctaacacagacacccagttgtctttgttccttcacacagtcaatc 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 572 ttctactttacgctgctaacacagacacccagttgtctttgttcctttacacagtcaatc 513
Query: 304 tcacactacaattctactgacttcccttacaccatcaatgtattatgtctccacacttcc 363
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 512 tcacactacaattctactgacttcccttacaccatcaatgtat--tgtctccacacttcc 455
Query: 364 tatcttgtgcaaatatcatcagcctgccatcaggcttcacttatgtcatcaagaataaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatcttgtgcaaatatcatcagcctgccatcaggcttcacttatgtcatcaagaataaaa 395
Query: 424 taggtcccctttccctaaaacaaaacatgacaggccaagaacagaaagattacaacactt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taggtcccctttccctaaaacaaaacatgacaggccaagaacagaaagattacaacactt 335
Query: 484 gtccatctgagacatcattctgtctggatttctccatcttccaagatcctaatgtgaaac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtccatctgagacatcattctgtctggatttctccatcttccaagatcctaatgtgaaac 275
Query: 544 tgaaaacccttattaaaacacaacattttcacaacattcttttgctctaataaatctttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgaaaacccttattaaaacacaacattttcacaacattcttttgctctaataaatctttt 215
Query: 604 ctgtttcctttctgtgatgctggggtagaatttagggcttcatgcatgctagccaagtac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ctgtttcctttctgtgatgctggggtagaatttagggcttcatgcatgctagccaagtac 155
Query: 664 tctagcaggaagctacgt 681
||||||||||||||||||
Sbjct: 154 tctagcaggaagctacgt 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_j06.g1 MSMg01no507_j06.g1 CHROMAT_FILE:
MSMg01no507_j06.g1 PHD_FILE: MSMg01no507_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:10 2005
(640 letters)
>mm_chr1_133647461_133648500
Length = 1040
Score = 1214 bits (628), Expect = 0.0
Identities = 637/640 (99%)
Strand = Plus / Plus
Query: 1 ttcctagaggaggtcctaaattcctaggctgtactgaaagggacttcactagccttcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctagaggaggtcctaaattcctaggctgtactgaaagggacttcactagccttcagg 260
Query: 61 gtcttcccactctcaggtccctgggctctggtggtgggttgtacaacccatcagccaaag 120
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 261 gtcttcccactctcaggtccctgggctctggtggtaggttgtgcaacccatcagccaaag 320
Query: 121 gaaagggctgtacacagtggcccatacacataccccagaaccctgggccacgggctccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gaaagggctgtacacagtggcccatacacataccccagaaccctgggccacaggctccat 380
Query: 181 cctccctgtcctcagacttctggcaagcctcacattccctcgctcccttggggaaacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctccctgtcctcagacttctggcaagcctcacattccctcgctcccttggggaaacagc 440
Query: 241 tgattcagttacttggattgaggtcactggcagcagctgaagtggagccacaggtggaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattcagttacttggattgaggtcactggcagcagctgaagtggagccacaggtggaac 500
Query: 301 tggttgaggccggggaatcacccactggagtctttactaaaaatcctagttcagccctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggttgaggccggggaatcacccactggagtctttactaaaaatcctagttcagccctgc 560
Query: 361 ctctcctgggaggctccacctctgctcagtgacactcaagagctgtgtgcccagtgtctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctcctgggaggctccacctctgctcagtgacactcaagagctgtgtgcccagtgtctg 620
Query: 421 agccctgtccccaaaactatgctccccagacagatgggctcagccagtctctgtgtccta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccctgtccccaaaactatgctccccagacagatgggctcagccagtctctgtgtccta 680
Query: 481 tgagatcacatttaagttgtttgcatgctggagggatggaggatctgatgtattcctgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagatcacatttaagttgtttgcatgctggagggatggaggatctgatgtattcctgaa 740
Query: 541 gtttagggttcattaaaaccatagagaggcagaaactaacagttcccatgacgttggcac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtttagggttcattaaaaccatagagaggcagaaactaacagttcccatgacgttggcac 800
Query: 601 aagagccttgaacagtgtcttacacacaggcagtgctcca 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagagccttgaacagtgtcttacacacaggcagtgctcca 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
