BAC Information

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BAC

Clone NameMSMg01-507L16
Chromosome1 (Build37)
Map Location 22,239,866 - 22,421,836
singlet/doubletdoublet
Overlap geneRims1
Upstream geneGsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28, LOC435612, LOC100040338
Downstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507L16.T7 (MSMg01no507_l16.b1)MSMg01-507L16.TJ (MSMg01no507_l16.g1)
ACCAG581809AG581810
length772778
length of high quality
(start - end)		634 (47 - 680)520 (77 - 596)
definitionCHROMAT_FILE: MSMg01no507_l16.b1 PHD_FILE: MSMg01no507_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:22 2005CHROMAT_FILE: MSMg01no507_l16.g1 PHD_FILE: MSMg01no507_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,421,207 - 22,421,836)(22,239,866 - 22,240,385)
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTATAGTGTTCGATAACATTTTCTATTTGCTGTTTTTATTTTT
AGAGACCATGCTAGTTACACACATTTTAACAGAATCTCACATAGGATATA
AAATTACAAAATTTAATGAAATTGAATTGCTAAAAATGATTATAAATGAA
AATCTTTTGTCATATTCAAATCAAAACGAATGAGACTATTGCTGCTAAGA
AAGTTATCAAATAATTATTGGGATTTGTCAGCCTTAACTTTGCTACTGTG
GGTGTTTCTCATGTTGTATTCAACCTTTTCCCCTTTAAATGAGGTATTGG
AGGATACCAACTAAAACATTGATTTAAGTGGTGAGCTTTTCTTCCTCTGA
GGAGTCAGCATGGCTCACGGACCCACTGCTCATGAGAGTATTGCTCGGAC
ATCACTTATGAAACTCTGAATTATAAACATACCTTTATTTTCTGTTAAAT
ATACTAGTCGTTCTAGTGTTTGATGAATGATATATTATCTTTATTATACA
AAAACCAATGTTTACATGTTGCGGTAGTTATTAAATACACCAGTGATGAG
AAAGTATGAGATTTGGTTGTTGTAGAGCATTCTGTATTCCTGTGGTTATA
TGAACCAGCTCATCTTAACTGCTTAAGAAGAATGAAGCCCATAGGCAAAT
GGACATTTTGGAGCATCTCAGTAAGTTCCAGAAAAGAGACTAAAATCTCT
AATTTATAACTGAAACAATTTN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTGCCTCACACTTAAATTGAA
GGATTTACACTACTTACTTGTTAATGTTCTTCTATACGACATGCTGAGTA
TGACTTCCAGAATGTGACAGTGAAATTATATAAATGAGTGTACTTGAATC
ACTATATTTGTTAATACAACATTTTAATTTAACAGTGCTCTTCTTGCCTG
ACCTCTACATAATTAAAATCTTCTGAAGGCATTCATGTTATTTTCCACTT
ACATTTTGGGATCACTGTGTGTCCTTACTTCTATAAATATCAGGGATTGA
ATCTGTAGTCAGCACATGTCACTCTCCCACCCTCTGGTTGTAAAGAACAT
GATCATGCATAAGTCTTTGTGTTGTTGATGCTCAAATTTTGAGGATTTTA
ATATCTGGTTTACTCTTCATATCTCCCACAATTCTGGTCATAAACCTGAA
GAAATTTAATTTCCAAAGGAAAATAAACTGTTTCATGGACGAAGCTGAGC
TTCCTGATCATTTTTAATCAAATTAGTTTTATACTGTTATTATTAAGTAT
TGTTTTCTCTTAAATGTTAAATTAAAAACAATGAGTTTGACATTGTCCCC
TGCAACTGCCCCTTCTTCTTCCACTGTTTCTCACCTTCTCTCTTTTGCAT
TAAACATGACCTTTAATAACAGAGGTTTCTAGAACTTTGTGCTCTTTTAG
GTGATCAATTAAAGAACACTGTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_l16.b1 MSMg01no507_l16.b1 CHROMAT_FILE:
MSMg01no507_l16.b1 PHD_FILE: MSMg01no507_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:22 2005
         (634 letters)



>mm_chr1_22421003_22422036
          Length = 1034

 Score = 1141 bits (590), Expect = 0.0
 Identities = 620/630 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtatagtgttcgataacattttctatttgctgtttttatttttagagaccatg 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gaattctgtatagtgatggataacattttctatttgctgtttttatttttagagaccatg 775

                                                                       
Query: 65  ctagttacacacattttaacagaatctcacataggatataaaattacaaaatttaatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ctagttacacacattttaacagaatctcacataggatataaaattacaaaatttaatgaa 715

                                                                       
Query: 125 attgaattgctaaaaatgattataaatgaaaatcttttgtcatattcaaatcaaaacgaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 714 attgaattgctaaaaatgattataaatgaaaatcttttgtcatattcaaatcaaaaggaa 655

                                                                       
Query: 185 tgagactattgctgctaagaaagttatcaaataattattgggatttgtcagccttaactt 244
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 654 tgagactattgctgctaaggaagttatcaaataattattgggatttgtcagccttaacgt 595

                                                                       
Query: 245 tgctactgtgggtgtttctcatgttgtattcaaccttttcccctttaaatgaggtattgg 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgctactgtgggtgtttctcgtgttgtattcaaccttttcccctttaaatgaggtattgg 535

                                                                       
Query: 305 aggataccaactaaaacattgatttaagtggtgagcttttcttcctctgaggagtcagca 364
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 534 aggataccaactaaaacattgatttaagtggtgagcctctcttcctctgaggagtcagca 475

                                                                       
Query: 365 tggctcacggacccactgctcatgagagtattgctcggacatcacttatgaaactctgaa 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 474 tggctcacggacccactgctcatgagagtattgctcggacatcacttacgaaactctgaa 415

                                                                       
Query: 425 ttataaacatacctttattttctgttaaatatactagtcgttctagtgtttgatgaatga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttataaacatacctttattttctgttaaatatactagtcgttctagtgtttgatgaatga 355

                                                                       
Query: 485 tatattatctttattatacaaaaaccaatgtttacatgttgcggtagttattaaatacac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tatattatctttattatacaaaaaccaatgtttacatgttgcggtagttattaaatacac 295

                                                                       
Query: 545 cagtgatgagaaagtatgagatttggttgttgtagagcattctgtattcctgtggttata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 294 cagtgatgagaaagtatgagatttggttgttgtagagcattctgtattcctgtggttgta 235

                                         
Query: 605 tgaaccagctcatcttaactgcttaagaag 634
           ||||||||||||||||||||||||||||||
Sbjct: 234 tgaaccagctcatcttaactgcttaagaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_l16.g1 MSMg01no507_l16.g1 CHROMAT_FILE:
MSMg01no507_l16.g1 PHD_FILE: MSMg01no507_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:22 2005
         (520 letters)



>mm_chr1_22239666_22240585
          Length = 920

 Score =  990 bits (512), Expect = 0.0
 Identities = 518/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttgcctcacacttaaattgaaggatttacactacttacttgttaatgttcttctata 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttgccttacacttaaattgaaggatttacactacttacttgttaatgttcttctata 260

                                                                       
Query: 61  cgacatgctgagtatgacttccagaatgtgacagtgaaattatataaatgagtgtacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgacatgctgagtatgacttccagaatgtgacagtgaaattatataaatgagtgtacttg 320

                                                                       
Query: 121 aatcactatatttgttaatacaacattttaatttaacagtgctcttcttgcctgacctct 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 aatcactatatttgttaatacaacattttaatttaacagtactcttcttgcctgacctct 380

                                                                       
Query: 181 acataattaaaatcttctgaaggcattcatgttattttccacttacattttgggatcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataattaaaatcttctgaaggcattcatgttattttccacttacattttgggatcact 440

                                                                       
Query: 241 gtgtgtccttacttctataaatatcagggattgaatctgtagtcagcacatgtcactctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtccttacttctataaatatcagggattgaatctgtagtcagcacatgtcactctc 500

                                                                       
Query: 301 ccaccctctggttgtaaagaacatgatcatgcataagtctttgtgttgttgatgctcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaccctctggttgtaaagaacatgatcatgcataagtctttgtgttgttgatgctcaaa 560

                                                                       
Query: 361 ttttgaggattttaatatctggtttactcttcatatctcccacaattctggtcataaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgaggattttaatatctggtttactcttcatatctcccacaattctggtcataaacc 620

                                                                       
Query: 421 tgaagaaatttaatttccaaaggaaaataaactgtttcatggacgaagctgagcttcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaagaaatttaatttccaaaggaaaataaactgtttcatggacgaagctgagcttcctg 680

                                                   
Query: 481 atcatttttaatcaaattagttttatactgttattattaa 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcatttttaatcaaattagttttatactgttattattaa 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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