Query= MSMg01no508_d17.b1 MSMg01no508_d17.b1 CHROMAT_FILE:
MSMg01no508_d17.b1 PHD_FILE: MSMg01no508_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:04 2005
(666 letters)
>mm_chr1_75721273_75722345
Length = 1073
Score = 1181 bits (611), Expect = 0.0
Identities = 654/675 (96%), Gaps = 15/675 (2%)
Strand = Plus / Minus
Query: 3 gaattcacagctttg--ttcgggttaaggaccaggaaaaaaagagtctaccagactcact 60
||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct: 873 gaattcacagctttgcat--gggttaaggaccaggaaaaaaagagtctgccagactcact 816
Query: 61 gcttctgaggagggtgtga--atgctcactgatgctaattagcacccagcgactttcctt 118
||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||
Sbjct: 815 gcttctgaggagggtgtgaacat--tcactgatgctaattagcatccagcgcctttcctt 758
Query: 119 tgcccatacagtattttctaaccaattgctcagcattagtgattctgctgggattgattt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgcccatacagtattttctaaccaattgctcagcattagtgattctgctgggattgattt 698
Query: 179 aatagtctaatatgaagtttcaggccttctgtacaggttaattacatgtggtcttacaca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aatagtctaatatgaagtttcaggccttctgtacaggttaattacatgtggtcttacaca 638
Query: 239 ttctaatttaaaacactgcctttgcaattatcatcagcactaaaacagagccctagtaat 298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ttctaatttaaaatactgcctttgcaattatcatcagcactaaaacagagccctagtaat 578
Query: 299 gaagctgggcttggtttttt-------ttttttttttcagaagtaatgaattgaaaaaac 351
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 577 gaagctgggcttggttttttgtttttgttttttttttcagaagtaatgaattgaaaaaac 518
Query: 352 gaaatgacttttaatttctttggcacttcatttcaatctctcttcccttctgcagaaaat 411
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 517 gaaatgacttttaatttctttggcgcttcatttcaatctctcttcccttctgcagaaaat 458
Query: 412 ataaatcagggtcgcctgcttattacaaactgttagacaaacaggcaaaatcgccttaag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ataaatcagggtcgcctgcttattacaaactgttagacaaacaggcaaaatcgccttaag 398
Query: 472 gaaagcaggagtagtcagtgtgaaacaagatttgactgggtcctgaccactacagtgctc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaaagcaggagtagtcagtgtgaaacaagatttgactgggtcctgaccactacagtgctc 338
Query: 532 tttattctaccctaacctcccaggtatagtatattgaaatgtgaagttgtgtatttggct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttattctaccctaacctcccaggtatagtatattgaaatgtgaagttgtgtatttggct 278
Query: 592 agcactagtccagtgtttacactgtgtcaagtattgtcctgaagcttataagtaaccata 651
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agcactagtccagtatttacactgtgtcaagtattgtcctgaagcttataagtaaccata 218
Query: 652 caggcactaaaacaa 666
|||||||||||||||
Sbjct: 217 caggcactaaaacaa 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1073
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1063
Effective search space: 697328
Effective search space used: 697328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_d17.g1 MSMg01no508_d17.g1 CHROMAT_FILE:
MSMg01no508_d17.g1 PHD_FILE: MSMg01no508_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:04 2005
(590 letters)
>mm_chr1_75571329_75572318
Length = 990
Score = 980 bits (507), Expect = 0.0
Identities = 566/591 (95%), Gaps = 11/591 (1%)
Strand = Plus / Plus
Query: 1 aagtcatcaattttcttaatgtagctaccacgggttgatgctgggtgaataagaagaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aagtcatcaattttcttaatgtagctaccacgggttgatgctgggtgaataagaagaatg 269
Query: 61 gcacacttcacaggtccggcaggctatattggctttgatctggagagcaaacgtttgaag 120
|| |||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 270 gcccacttcacgggtccagcaggct---------ttgatctggagagcaaacgtttgaag 320
Query: 121 aacagatggtaggacactaagggtgagaaatgtcccgtggcacaatctgttttaagaata 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagatggcaggacactaagggtgagaaatgtcccgtggcacaatctgttttaagaata 380
Query: 181 gctggcaccagtcaaaacccgggtgacattcctctggccagtctggctcagaggcagctc 240
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gctggcaccagtcaaaacctgggtgacattcctctggccagtctgactcagaggcagctc 440
Query: 241 atagctagtgtcttgtatacattaggagcttactatatgttttaatcagcagctgtctgg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagctagtgccttgtatacattaggagcttactatatgttttaatcagcagctgtctgg 500
Query: 301 aaatccttcagattcagcgcaaccttcaaaatctatctagactctgatgctcagtaactc 360
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 aaatccttcagattcagcgaaaccttcaaaatctatctagactccgatgctcagtaactc 560
Query: 361 attaactgctgttatcatggcctgattcccctaccatctttgacctggccgcctccacca 420
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttaactgctgttatcatggtctgattcccctaccatctttgacctggccgcctccacca 620
Query: 421 gccttaaaactggtctttctgcatctaccctcaggttctagaggagtttattctttttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccttaaaactggtctttctgcatctaccctcaggttctagaggagtttattctttttta 680
Query: 481 tatacaagtttaaaatcttttacatctaatcttttatttacttaatatgtttgaggagga 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatacacgtttaaaatcttttacatctaatcttttatttacttaatatgtttgaggagga 740
Query: 541 gagcacacgtgccac-ggcacatgcgtggggtaagagcacagcctttgaga 590
|||| |||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 741 gagcgcacgtgccacagg-acatgtgtggggtaagagcacagcctttgaga 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
