BAC Information

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BAC

Clone NameMSMg01-508E13
Chromosome1 (Build37)
Map Location 105,388,420 - 105,388,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508E13.T7 (MSMg01no508_e13.b1)MSMg01-508E13.TJ (MSMg01no508_e13.g1)
ACCAG582233AG582234
length732756
length of high quality
(start - end)
487 (50 - 536)370 (333 - 702)
definitionCHROMAT_FILE: MSMg01no508_e13.b1 PHD_FILE: MSMg01no508_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:09 2005CHROMAT_FILE: MSMg01no508_e13.g1 PHD_FILE: MSMg01no508_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTTACTCTGTATATCATTTTAACAGAGTTATTTGGT
GCTCTGGAGTCTAACATCTTGTGTTCTTTGTATATAGTGGATATTATCCC
TCTATTGGATATAGGGTTGTTAAATATCTTTTCCCTGTCTGTAGGTTGCC
ATTTTGCACTGTTGACATTGTCCTTTGCCTTACAGTAGCTTTTCAATTTT
ATGAGATACCATTGTCTATAATTGATCTTAGCGCCAGAACCATTGGTGTT
CTGTTCAGGAAAATTATATAGGAAGTGACTCACAGACCAGATGAAGCTCC
AGAAGACAGAAGATAAAACTGTGGACACTTCAATCCTACTCAGAAGGGAG
AACATAATAATCATGGCTGGGAGAGAGAGAAAGGAACCTGGGAGGGAGAG
AGGAGGGGGAGGCAAAAGGGTGAGCAAATTCAGGAGTGGGAGGAGATGGG
GAAGAAGTGCAAAGTCTCAGGAAATTGAAAGGAGATGTGTAGCAGTGGAG
GATGGACAATTGAGAGTAGCCACTAGAAAGTCCCAGATGCCANNGAAAAC
ATAGGCTTTCCAGGATCCCAACAGGGATGACTTTAACTTGAAATTACCCA
ACAAAGGGGAACGAAAAACCTTTTAGAGAACCCCTTTCCCAAATTTTTGG
GCTGGGCCCCCTCTAATTAAGGGGGGGGGGGN
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATACAAACCATGTAAGAG
GTCCACTTGCCTCTGTCTCTCTAGTACTGTGATTATAGGTGCATGTCACC
ATTCTCAATCTCCATATTTAGACATTCATGCACAGATAAGCAAATCTCAG
TAAAAGTTTTGTAGAGACATTTTTAATAATTATTCTTTCTGATTCTTTTC
TCCCTACACTGTGTGTGTGTTCTCACTGTGTGTGCATGCACACATGCACA
CTTGTGTTTGTGCATGTTCTTTCATATTTATCATGTGCGAGGATGATTGG
GCATATGTAGACTGGTGAAGGATGTCAAGAATCATCAATTTAATACAGTA
TTTTTGAGGCAGGGGCTCAGTGAAATCCAGGGATCTTGATTCAGTTTGAG
TAAAGTAGTGACAAGCTGTCAGAAGGGGAACAAAACACCATTCAGGAAAA
GATGAGACTGCGGGGCAAAAAGTCCCTGAACTGATTGTCTTCCATCTAAG
AAATAATACATAAACTGCACATGAGAATTCATAAAAAAATACACAAATGG
TCCTTCCCATAGTTAGTTTTTGTAAGCCTGGAATTACAGGTAAGCTCAAA
ATTCTGAGCCATTTTCACTTCCTCCAGCTTTATTATTTATGCATTGGTAT
TCAATTTAAATGAGGGGAAAGTCTGAGGATATTTAAAAGCCATATCTGTC
TCATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_e13.g1 MSMg01no508_e13.g1 CHROMAT_FILE:
MSMg01no508_e13.g1 PHD_FILE: MSMg01no508_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:09 2005
         (370 letters)



>mm_chr1_105388220_105388990
          Length = 771

 Score =  627 bits (324), Expect = 0.0
 Identities = 360/372 (96%), Gaps = 3/372 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgcgaggatgattgggcatatgtagactggtgaaggatgtcaagaatcatcaattta 60
           ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 atgtgcggggatgattgggcatatgtagactggtgaacgatgtcaagaatcatcaattta 260

                                                                       
Query: 61  atacagtatttttgaggcaggggctcagtgaaatccagggatcttgattcagtttgagta 120
           ||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagtatttttgaggcagggtatcagtgaaatccagggatcttgattcagtttgagta 320

                                                                       
Query: 121 aagtagtgacaagctgtcagaaggggaacaaaacaccattcaggaaaagatgagactgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtagtgacaagctgtcagaaggggaacaaaacaccattcaggaaaagatgagactgcg 380

                                                                       
Query: 181 gggcaaaaagtccctgaactgattgtcttccatctaagaaataatacataaactgcacat 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcaaaaagtccctaaactgattgtcttccatctaagaaataatacataaactgcacat 440

                                                                       
Query: 241 gagaattcataaaaaaa-tacacaaatggtccttcccatagttagtttttgtaagcctgg 299
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaattcacaaaaaaaatacacaaatggtccttcccatagttagtttttgtaagcctgg 500

                                                                       
Query: 300 aattacaggtaagctcaaaattctgagccattttcactt-cctccagctttattatttat 358
           |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct: 501 aattacaggtgagctcaaaattctgagccattttcactttcc-ccagctttattattttt 559

                       
Query: 359 gcattggtattc 370
           ||||||||||||
Sbjct: 560 gcattggtattc 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 771
Length adjustment: 9
Effective length of query: 361
Effective length of database: 762
Effective search space:   275082
Effective search space used:   275082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)