Query= MSMg01no508_l11.b1 MSMg01no508_l11.b1 CHROMAT_FILE:
MSMg01no508_l11.b1 PHD_FILE: MSMg01no508_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:43 2005
(244 letters)
>mm_chr1_13216102_13216745
Length = 644
Score = 441 bits (228), Expect = e-128
Identities = 240/244 (98%)
Strand = Plus / Plus
Query: 1 ctaaagccaatttacagattcacacctcacattgaaatctgtattgctaagtagccaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaagccaatttacagattcacacctcacattgaaatctgtattgctaagtagccaagg 260
Query: 61 gctaacgttcaggcccaagcttcactgcgtggttagccatgtgaccttaaaacttgctac 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaacgttgaggcccaagcttcactgcgtggttagccatgtgaccttaaaacttgctac 320
Query: 121 tgcacaccactgattttctgtaagctggagtcacacctctggcatccgtagcacaggctg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacactactgattttctgtaagctggagtcacacctctggcatccgtagcacaggctg 380
Query: 181 cctagaggaggtggaaggggaaggtctgggacctcgatggagagaactcttgctcttcac 240
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 381 cctagaggaggtggaaggggaaggtctgggacctcgatggagaggacccttgctcttcac 440
Query: 241 tagc 244
||||
Sbjct: 441 tagc 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no508_l11.g1 MSMg01no508_l11.g1 CHROMAT_FILE:
MSMg01no508_l11.g1 PHD_FILE: MSMg01no508_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:43 2005
(234 letters)
>mm_chr1_13351991_13352624
Length = 634
Score = 406 bits (210), Expect = e-118
Identities = 223/232 (96%), Gaps = 8/232 (3%)
Strand = Plus / Minus
Query: 3 tagtgtgccagggtggttacttgagtacctgcattgaagaagcagtaacaagaacgaacg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagtgtgccagggtggttacttgagtacctgcattgaagaagcagtaacaagaacgaacg 320
Query: 63 gaagtgtcaactgaaggactaaaacctcaagagatgatgaaattctacaatatacattga 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 gaagtgtcaactgaaggactaaaacctcaagagatgatgaaattctacaatatacattaa 260
Query: 123 tatagactgtattaacacttataaaaatatcctgattctccaaattttacttacataaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatagactgtattaacacttataaaaatatcctgattctccaaattttacttac------ 206
Query: 183 gtatatttttattatttttaattgtgtgtgcatctgtgttcctggaggccag 234
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 --atatttttattatttttaattgtgtgtgcatctgtgttcctggaggccag 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
