Query= MSMg01no509_c03.b1 MSMg01no509_c03.b1 CHROMAT_FILE:
MSMg01no509_c03.b1 PHD_FILE: MSMg01no509_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:17 2005
(493 letters)
>mm_chr1_153659172_153660064
Length = 893
Score = 922 bits (477), Expect = 0.0
Identities = 489/493 (99%)
Strand = Plus / Minus
Query: 1 caagaaagggaaagcaaaggcattacagagttatacagtaattttaacttgtctgtgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 caagaaagggaaagcaaaggcattacagagttatacagtaattttaacttgtctgtgttt 634
Query: 61 gatgcacagcggagcaggaagggagtgaattttgaaaaagggccccgggaaaaggaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gatgcacagcggagcaggaagggagtgaattttgaaaaagggccccgggaaaaggaaatc 574
Query: 121 aagtacacaggagggtttgagaagatgaggacctgctcatattctgtctccatggctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aagtacacaggagggtttgagaagatgaggacctgctcatattctgtctccatggctaca 514
Query: 181 catccttacacacccgactcattcactccacggctctcaaatagctatcaattcagagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 catccttacacacccgactcattcactccacggctctcaaatagctatcaattcagagac 454
Query: 241 tctcaaagaacaaattattacaaaaagacaaaagactgactaggatagcactgtactgtt 300
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tctcaaagaacaaagcagtacaaaaagacaaaagactgactaggatagcactgtactgtt 394
Query: 301 cacatttaaaaaagatgtctcgtctgggaactaagtagttttgagcatctgttaacactc 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 393 cacatttaaaaaagatgtctcgtctgggaactaagtggttttgagcatctgttaacactc 334
Query: 361 acaaccccttacacaccatatcacagcgttcatttaagggagatgggtgaggacagtgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acaaccccttacacaccatatcacagcgttcatttaagggagatgggtgaggacagtgtc 274
Query: 421 ctctatactgcggcttagaatgactgctaccaggagcaggatcatagcctacatctgaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctctatactgcggcttagaatgactgctaccaggagcaggatcatagcctacatctgaca 214
Query: 481 tcccacttcccct 493
|||||||||||||
Sbjct: 213 tcccacttcccct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_c03.g1 MSMg01no509_c03.g1 CHROMAT_FILE:
MSMg01no509_c03.g1 PHD_FILE: MSMg01no509_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:17 2005
(501 letters)
>mm_chr1_153477642_153478546
Length = 905
Score = 917 bits (474), Expect = 0.0
Identities = 496/506 (98%), Gaps = 6/506 (1%)
Strand = Plus / Plus
Query: 1 atctcagtgccagcgaaatagccatgttttttttttttt-----gataattacctttcat 55
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 atctcagtgccagcgaaatagccatgttttttttttttttttttgataattacctttcat 260
Query: 56 aatggaaattcaatgtcttaaaaacaatttttgtttgtttgttttgcataggaaaagcca 115
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aatggaaattcaatgtcttaaaaacaatttttgtttgtttgttttgcatagaaaaagcca 320
Query: 116 cagatcaagggctaattaaataacattggataaaagctataatataattttcaaagttta 175
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatcaagggctaattaaataacactggataaaagctataatataattttcaaagttta 380
Query: 176 ggaaagagcacaatgtttgaattgttttgtatctcgtgacacaaaacagtgttttaacgt 235
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ggaaagagcacaatgtttgaattgttttgtatctcgtgacacaaagcagtgttttaacgt 440
Query: 236 ctcctattgttttcttatgaactagtctcctaaaaggtgttgaaatcgaggaaccttccc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctattgttttcttatgaactagtctcctaaaaggtgttgaaatcgaggaaccttccc 500
Query: 296 cttttgaaaagattttagactttagagccgtggttctcagccttcccagtgctgtgaccc 355
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 cttttgaaa-gattttagactttagagccgtggttctcagccttcccagcgctgtgaccc 559
Query: 356 tttaatacagttaattctgctgtggtgacccccagccataaagtaattttcattgctact 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttaatacagttaattctgctgtggtgacccccagccataaagtaattttcattgctact 619
Query: 416 tcttaactgtaattttgctactttcatgaacagaaatgtgaatatctgatatttctgatg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcttaactgtaattttgctactttcatgaacagaaatgtgaatatctgatatttctgatg 679
Query: 476 gtcttagatgacccctgtgaaagagc 501
||||||||||||||||||||||||||
Sbjct: 680 gtcttagatgacccctgtgaaagagc 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 905
Length adjustment: 10
Effective length of query: 491
Effective length of database: 895
Effective search space: 439445
Effective search space used: 439445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
