BAC Information

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BAC

Clone NameMSMg01-509C05
Chromosome1 (Build37)
Map Location 135,760,587 - 135,985,817
singlet/doubletdoublet
Overlap geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2
Upstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
Downstream geneEG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509C05.T7 (MSMg01no509_c05.b1)MSMg01-509C05.TJ (MSMg01no509_c05.g1)
ACCAG582886AG582887
length744772
length of high quality
(start - end)
345 (330 - 674)564 (82 - 645)
definitionCHROMAT_FILE: MSMg01no509_c05.b1 PHD_FILE: MSMg01no509_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:17 2005CHROMAT_FILE: MSMg01no509_c05.g1 PHD_FILE: MSMg01no509_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,985,476 - 135,985,817)(135,760,587 - 135,761,150)
sequence
NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCCTTTGGTGCGGAAAATATATGCAAGTCATAGCATATGTGTG
AAGGTCTGAGGGAAACTTGCAGGAGTGAGTTATCTCCTTTACCACGTGGG
TCCCAGGTCTAGAACTCAGTTTATCATACTCGGTTGTAAGCATCTTTACT
CCACTGAACCGTATCACTGACCCAAGTATTTTAAAGCTTTTTAGTTTTGT
GTTTGTGCGCGCTCACGCGCATATGCACACATGTGTGTGTATGTCACTTG
TGTGCACATGATCAGAGAGGTACCTCCTGGAGCTGGAGTTACAAGTTGTG
AGCTACTCAGCATAGGCACTGTAAACTGAACTCTAGACCTCTGGAAAAAC
AGCTAACATTTTAATTGCTGAAACAATGCATCAGCCTTGGCCTGGGTATT
TTAACAGGCTAACTTGAGTGTTTTCTTATGTTTCATAACAAAGCTATATA
ATGCATATATTTCTCCTTTGCCTTAGCTTCCTAGAAGTTGAGACATAGAT
TTAGGAGTTTAATACTAACAAATCAGCAAATGCCTACTTCCTCTCTCACC
TCACTATCTTAATGTTTAATATAAGCATATATATGTTTAAATTATTATAT
TTTATATAATATAATTATTTCCAGGTTCTATGTGAGTCAGTATTTAAGCT
GCTGCAGAGTCTTCTTAGGACAAACCAAAGCTGGGAATGTGGGC
TTTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGAGCAGAATTGCCGCA
CAGCCCACCATGTTCAAAGGAGTGTGATGGGGGAACCCCACCTTCCCAAA
GGTGGCCAGGCGCTTGGCAGATGCAAGCCAGATGAGAGCAGATGCTTTCT
CCAGAAGCAGAGCGTTACTGTGTCCATTTAAGTTTGGAGGAGAAAATGTG
CAAGAGTAGGCAAGAAATAGAAGAGAAAGATAATGACAGAAGACATTAAA
GCCTACTCTAAAACTCCAGAAATCATACAGTCTGGTATTGTGATCAATGG
TCCTGCTATCGGGCACAGAGGATCCCTGTATTCTTATGTGTCTATTCACA
GTAGCCAAGACACAGAATCAACTTTTGGGTTCGCCAACAGACGAGAGCAG
AAAGAAAACGAGGTGTACGTGATGGGATACTACTCTGCTGTGAAAAAGGA
TGAAATCCCGTCACTCGCAGCAGTCTGTACAGCTCTGGAGGTGCAAAATG
AGACAGCACAGTCAACAGACGATGAACAGCACGTCGGATTCATAATTGTG
GGGCCTTATAGGGGCTTGTTTAATAGAAACAGTGTTAGAAGAGTGATTAG
CAGAAGCTGGGGTTCAAAGAGAAGATTCTGGGCATCCCCAATGACCATCA
CTGCAAGAAATGGGTATGCTACTTACCTGTTGTACTGGCTGGCTTTTTTT
GGGGCAAGTTGACATAAGCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_c05.b1 MSMg01no509_c05.b1 CHROMAT_FILE:
MSMg01no509_c05.b1 PHD_FILE: MSMg01no509_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:17 2005
         (345 letters)



>mm_chr1_135985214_135985958
          Length = 745

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagctggagttacaagttgtgagctactcagcataggcactgtaaactgaactctagacc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 604 gagctggagttacaagttgtgagctacccagcataggcactgtaaactgaactctggacc 545

                                                                       
Query: 61  tctggaaaaacagctaacattttaattgctgaaacaatgcatcagccttggcctgggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tctggaaaaacagctaacattttaattgctgaaacaatgcatcagccttggcctgggtat 485

                                                                       
Query: 121 tttaacaggctaacttgagtgttttcttatgtttcataacaaagctatataatgcatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tttaacaggctaacttgagtgttttcttatgtttcataacaaagctatataatgcatata 425

                                                                       
Query: 181 tttctcctttgccttagcttcctagaagttgagacatagatttaggagtttaatactaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tttctcctttgccttagcttcctagaagttgagacatagatttaggagtttaatactaac 365

                                                                       
Query: 241 aaatcagcaaatgcctacttcctctctcacctcactatcttaatgtttaatataagcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaatcagcaaatgcctacttcctctctcacctcactatcttaatgtttaatataagcata 305

                                                     
Query: 301 tatatgtttaaattattatattttatataatataattatttc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tatatgtttaaattattatattttatataatataattatttc 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no509_c05.g1 MSMg01no509_c05.g1 CHROMAT_FILE:
MSMg01no509_c05.g1 PHD_FILE: MSMg01no509_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:17 2005
         (564 letters)



>mm_chr1_135760387_135761350
          Length = 964

 Score =  998 bits (516), Expect = 0.0
 Identities = 552/564 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgagcagaattgccgcacagcccaccatgttcaaaggagtgtgatgggggaaccccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cgtgagcagaattgccgcacagcccaccatgttcaaaggagtgtgatggaggaaccccac 260

                                                                       
Query: 61  cttcccaaaggtggccaggcgcttggcagatgcaagccagatgagagcagatgctttctc 120
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 cttcccaaaggtgaccaggcgcttggcagatgcaagccagatgagagcagatactttctc 320

                                                                       
Query: 121 cagaagcagagcgttactgtgtccatttaagtttggaggagaaaatgtgcaagagtaggc 180
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggaagcagagcgtcactgtgtccatttaagtttggaggagaaaatgtgcaagagtaggc 380

                                                                       
Query: 181 aagaaatagaagagaaagataatgacagaagacattaaagcctactctaaaactccagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aagaaatagaagagaaagataatgacagaagacattaaagcctactctaaagctccagaa 440

                                                                       
Query: 241 atcatacagtctggtattgtgatcaatggtcctgctatcgggcacagaggatccctgtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcatacagtctggtattgtgatcaatggtcctgctatcgggcacagaggatccctgtat 500

                                                                       
Query: 301 tcttatgtgtctattcacagtagccaagacacagaatcaacttttgggttcgccaacaga 360
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 501 tcttatgtgtctattcacagtagccaagacacggaatcaacttttgggtttgccaacaga 560

                                                                       
Query: 361 cgagagcagaaagaaaacgaggtgtacgtgatgggatactactctgctgtgaaaaaggat 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgagagcagaaagaaaacaaggtgtacgtgatgggatactactctgctgtgaaaaaggat 620

                                                                       
Query: 421 gaaatcccgtcactcgcagcagtctgtacagctctggaggtgcaaaatgagacagcacag 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaatcccgtcactcgcagcagtctgtacagctctggaggtgcaaaatgagacagcacag 680

                                                                       
Query: 481 tcaacagacgatgaacagcacgtcggattcataattgtggggccttataggggcttgttt 540
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 tcaacagacgatgaacagctcgtcggattcataattgtggggccttataggggcttattt 740

                                   
Query: 541 aatagaaacagtgttagaagagtg 564
           ||||||||||||||||||||||||
Sbjct: 741 aatagaaacagtgttagaagagtg 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)