Query= MSMg01no509_h12.b1 MSMg01no509_h12.b1 CHROMAT_FILE:
MSMg01no509_h12.b1 PHD_FILE: MSMg01no509_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:42 2005
(683 letters)
>mm_chr1_81674493_81675580
Length = 1088
Score = 1251 bits (647), Expect = 0.0
Identities = 679/698 (97%), Gaps = 15/698 (2%)
Strand = Plus / Minus
Query: 1 ctagctatatatactcagatcaactactcagcatgcagagccttca-----ggtattcat 55
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 825 ctagctatatatactcagatcaactactcagcatgcagagccttcagaaccggtattcat 766
Query: 56 ttcataaaagagtggaacatttaagcaaggtaacagaaggaaattccaaagtgtgtgggg 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttcataaaagagtggaacatttaagcaaggtaacagaaggaaattccaaagtgtgtgggg 706
Query: 116 tcttacagaaacaggcattgcatgccaatttttacttttataatcttaacggtttttatt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tcttacagaaacaggcattgcatgccaatttttacttttataatcttaacggtttttatt 646
Query: 176 taaattttactttctagcctacgtctttattgtcattataacatgaatctggattatttt 235
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 645 taaattttactttctagcctacgtttttattgtcattataacatgaatctggattatttt 586
Query: 236 tgatcagtttttgttttttaattggtaaacatattttgaaggtcggaaaaaatagcttta 295
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgatcagtttttgtaatttaattggtaaacatattttgaaggtcggaaaaaatagcttta 526
Query: 296 caaatgttgtcacaccctttagaattagaaaacaagaagatttattttgaaactgacagg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caaatgttgtcacaccctttagaattagaaaacaagaagatttattttgaaactgacagg 466
Query: 356 atatagtcacatttcttccttaagacaaatgtctgtattttataaatacatctgaaacct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atatagtcacatttcttccttaagacaaatgtctgtattttataaatacatctgaaacct 406
Query: 416 cttttgttgtcttgtaactataacaatctgataaactagaatgtgtatcaggaaacagac 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cttttgttgtcttgtaactataacaatctgataaactagaatgtgtatcaggaaacagac 346
Query: 476 aggccataaatatgttccatgttttcaaagatgacaagcttaaatgtgagagctgtggat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aggccataaatatgttccatgttttcaaagatgacaagcttaaatgtgagagctgtggat 286
Query: 536 gagatgaaacaaagggactgagcagcgattaagatggaagaactatgaaacatttggatt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gagatgaaacaaagggactgagcagcgattaagatggaagaactatgaaacatttggatt 226
Query: 596 tgattccaccctggctcaattcca-----cc-----caagttaatttggtgtacagcctg 645
|||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 225 tgattccaccctggctcaattccacaattcctggctcaagttaatttggtgtacagcctg 166
Query: 646 aagcaagngattcctctttctcctctattcatttggcc 683
||||||| ||||||||||||||||||||||||||||||
Sbjct: 165 aagcaagtgattcctctttctcctctattcatttggcc 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1088
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1078
Effective search space: 725494
Effective search space used: 725494
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_h12.g1 MSMg01no509_h12.g1 CHROMAT_FILE:
MSMg01no509_h12.g1 PHD_FILE: MSMg01no509_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:42 2005
(628 letters)
>mm_chr1_81568162_81569188
Length = 1027
Score = 1139 bits (589), Expect = 0.0
Identities = 619/629 (98%), Gaps = 2/629 (0%)
Strand = Plus / Plus
Query: 1 aaatgaaaaacaaaaaac-aaaaaaactctagactgtaacacagaccacataacaaaata 59
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 200 aaatgaaaaacaaaaaacaaaaaaaactctagactgtaacacagaccaaataacaaaata 259
Query: 60 agcaacatacatagccacatagctgcaccatggggacatatataaaagatagcaaatagg 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcaacatacatagccacatagccgcaccatggggacatatataaaagatagcaaatagg 319
Query: 120 ggtttttatattacatttacttattcattttttgtgtgagtgtttgtgttgtcaaggggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtttttatattacatttacttattcattttttgtgtgagtgtttgtgttgtcaaggggc 379
Query: 180 atgtgtccgtacaaaaatgtggagatcagaggataacttgtgggagtctgttctcgcctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgtgtccgtacaaaaatgtggagatcagaggataacttgtgggagtctgttctcgcctt 439
Query: 240 tgatcttgtggggcctgaggattgaacttactttgtcaggcttggtggtaagtgagccat 299
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgaacatgtggggcctgaggattgaacttactttgtcaggcttggtggtaagtgagccat 499
Query: 300 ctagctggtgcataaaccctttcataaacaacaacaacaaaattctcttatttttttccc 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 500 ctagctggtgcataaaccctttcataaacaacaacaacaaaattctcttatttttt-ccc 558
Query: 360 tcttctgatttatcgcaactacacaatatgatagtgggttaataactacagtctgggtta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcttctgatttatcgcaactacacaatatgatagtgggttaataactacagtctgggtta 618
Query: 420 ataaggagacaccatgtaagaaataatttctaataataataataagttctaataaaatag 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ataaggatacaccatgtaagaaataatttctaataataataataagttctaataaaatag 678
Query: 480 cataaaataaaatgatagtgtccaaatcactagctatattattgaaattagtttattaat 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 679 cataaaataaaatgatagtgtccaaatcacttgctatattattgaaattagtttattaat 738
Query: 540 ctaacggttgtgctgaatccaatcaaagattgaagattcttaattataacacaaaaagag 599
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 739 ctaacggttgtgctgaatccaatcaaagattgaagattcgaaattataacacaaaaagag 798
Query: 600 caaaataaagtaagctgctggaaaataca 628
|||||||||||||||||||||||||||||
Sbjct: 799 caaaataaagtaagctgctggaaaataca 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space: 628506
Effective search space used: 628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
