CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAATAATCCGCGGAAT
TCACATTAAATTCCAATGGCTGCTTTGAGTGATGTTGCTGTGAGTAAAGC
CACCATTTAATATTATCATTAAACTTAATAAATAGCAACATTATTGAGCA
GTGCTAAAGTTCAATAGGGGATTTCATGTCTATTTTTCTTTGTTATTCTT
AATTCATAGCTGTCTCTACCACAATCCCTAATCTACAGTTACTTCTTGGT
GAGATAAGAGAGGTCATTACTGCTGCCTAAGGATGAAGAGTATATGGAAA
TCAGAAGGGTCTTATGGTACACTTTTGTTCAAAGTAATCTGTCTCACAAA
GGAAGTATGGGAAAAATAAGCAAAACAGCCCTGGTTTGTAGAGTTCGCTA
CTCTTGGTGCATAAAACCTCCTGCGTGGCCAATTGCAAGCTGCTCATCAA
TCATACAGTTGGGAAGCCATGCGTGTATTTGGCCATGGAAGGGGATAGGA
AACACTCCGAGACTAGAGATCACCCAGCGGGGAATGTGCTCAAAGCCTGA
ACTTCTGAGTTTCTCTCTCCTGATGGAAACTGCAAAGAACAAAGGCATTG
CCAGAAACGTGCAGTCCTTTCTCAGATAATAAATTATATACACAATTTAC
TTCATTGAACAGCTGAACAGGTTTAGTCAAATAGCCCTGGCTTCCAGGGT
TTAAAGGTTTTATTTTTCTGTATATTAAATCACTTTCAAATACCTTTTCT
TCTTACATACCCTCTCAGATACTCCCCTTCCTCTTTAN

AAATGACGGTGGGAAGGGTGGGTCACGGGGGTGAGGAGGAGATTCATGAG
TGGGGGGAGGGGGGGGGGGTGGGCGCTGGGCGGGGCTTGGTGGCAGCGGG
GGGTTGATGGGGGATTGGAGGATGTGGCATAACGAGTAATCGCCCCTGCA
GCTGGCCCCGCACCCGGACCCGTTGAGACCGCCTTAGTGGGGGAGGGTTT
TTGGGAGTTTTACTATTATTCGCACCCCCCATTGGCCGTGGGGCAGCTTA
ATTGTACGATTTTGACAGTACGCCCGCGTATATCGTTTCCACTTTTAGGC
TCGTGCAGCCATCCCCAATGGATCCGTGGTCCGCCTTTGGTTTAGTACAA
AATTAATCGCGCAAAACAAGACGCATTACTATCTTTTTCACTTTTAGCCG
CCTTTTTTTTCCCTTATTTGCCGTGCTTCACTGTCTCGCATATTTACACC
TCACTGCCGAGATCCCCCCGAAAAAACGAAAAAATCCCAGGGAGAAGCCA
GGGAGATGTGTGACTAGGCTATAAAGACTTCTAAACCCTAACCAACCCAC
CAAGTGGGTTAATGTCCGCCACGCCCATGACTATATTATTCTATCCCGCC
CCATCCCAATTTACCCAAAGGGGCGTCCCCGTCAAATTTAGCTGCCTCAA
CAATTAAGTTGTCGTTGGGGTTCTCCTATAAAGGGGGGGGCCTCCCTTTT
TCTCGTTAGGGCCAAGCGCGCGGGGAACAGAACGACGNCCCAAACACCAG
AAAAAGAAAAAATGGGGCGNNGTTGCCNNNNNNNNAATNTTTTTTTTTNN
AAAGTTNNNGGTTTGANNCCCACCCCCACATTTTTTGAGGNAAAGGGGGG
CCAAA

Query= MSMg01no509_k24.b1 MSMg01no509_k24.b1 CHROMAT_FILE:
MSMg01no509_k24.b1 PHD_FILE: MSMg01no509_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:00 2005
         (551 letters)



>mm_chr1_66345509_66346459
          Length = 951

 Score = 1017 bits (526), Expect = 0.0
 Identities = 544/550 (98%), Gaps = 3/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcacattaaa-t-tccaatggctgctttgagtgatgttgctgtgagtaaagccacc 61
           |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcacattaaagtatc-aatggctgctttgagtgatgttgctgtgagtaaagccacc 261

                                                                       
Query: 62  atttaatattatcattaaacttaataaatagcaacattattgagcagtgctaaagttcaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atttaatattatcattaaacttaataaatagcaacattattgagcagtgctaaagttcaa 321

                                                                       
Query: 122 taggggatttcatgtctatttttctttgttattcttaattcatagctgtctctaccacaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taggggatttcatgtctatttttctttgttattcttaattcatagctgtctctaccacaa 381

                                                                       
Query: 182 tccctaatctacagttacttcttggtgagataagagaggtcattactgctgcctaaggat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tccctaatctacagttacttcttggtgagataagagaggtcattactgctgcctaaggat 441

                                                                       
Query: 242 gaagagtatatggaaatcagaagggtcttatggtacacttttgttcaaagtaatctgtct 301
           |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||
Sbjct: 442 gaagagtatatggaaatcagaagggtcttatggtacacataggttcaaagtaatctgtct 501

                                                                       
Query: 302 cacaaaggaagtatgggaaaaataagcaaaacagccctggtttgtagagttcgctactct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cacaaaggaagtatgggaaaaataagcaaaacagccctggtttgtagagttcgctactct 561

                                                                       
Query: 362 tggtgcataaaacctcctgcgtggccaattgcaagctgctcatcaatcatacagttggga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tggtgcataaaacctcctgcgtggccaattgcaagctgctcatcaatcatacagttggga 621

                                                                       
Query: 422 agccatgcgtgtatttggccatggaaggggataggaaacactccgagactagagatcacc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agccatgcgtgtatttggccatggaaggggataggaaacactccgagactagagatcacc 681

                                                                       
Query: 482 cagcggggaatgtgctcaaagcctgaacttctgagtttctctctcctgatggaaactgca 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cagcggggaatgtgctcaaagcctgaacttctgagtttctctctcctgatggaaactgca 741

                     
Query: 542 aagaacaaag 551
           ||||||||||
Sbjct: 742 aagaacaaag 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)