Query= MSMg01no509_m15.b1 MSMg01no509_m15.b1 CHROMAT_FILE:
MSMg01no509_m15.b1 PHD_FILE: MSMg01no509_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:09 2005
(274 letters)
>mm_chr1_24739565_24740238
Length = 674
Score = 458 bits (237), Expect = e-133
Identities = 264/273 (96%)
Strand = Plus / Minus
Query: 2 cccaacaagaataaaacataaactgggtggtggtgacgcacgcctttaatcccagcacgt 61
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 629 cccaacaagaataaaacataaactgggtggtggtgacgcacgcctttagtcccagcactt 570
Query: 62 gggaggcagaggcaggcggatttctgaggtcaaggccagcctggtctacagagtgagttc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gggaggcagaggcaggcggatttctgaggtcaaggccagcctggtctacagagtgagttc 510
Query: 122 caggacagccaggactgcacagagaaatcttgtctggggggagagggggaataaaagacg 181
||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 509 caggacagccagggctacacagagaaagcctgtctggggggagagggggaataaaagacg 450
Query: 182 aggcgagaatagagaacttgcctaatgggttttcaagattaactaagctgttgtgtagta 241
|| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 449 agacgagaatagagaactcgcctaatgggttttcaagattaactaagctgttgcgtagta 390
Query: 242 cattgcttaggggtggtaactgcttaacaaaca 274
|||||||||||||||||||||||||||||||||
Sbjct: 389 cattgcttaggggtggtaactgcttaacaaaca 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no509_m15.g1 MSMg01no509_m15.g1 CHROMAT_FILE:
MSMg01no509_m15.g1 PHD_FILE: MSMg01no509_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:09 2005
(295 letters)
>mm_chr1_24544185_24544878
Length = 694
Score = 482 bits (249), Expect = e-140
Identities = 278/289 (96%), Gaps = 6/289 (2%)
Strand = Plus / Plus
Query: 1 atagtagaagccaaagattggccccaatttccttctatgttaatctcgatgtcaagatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagtagaagccaaagattggccccaatttccttctatgttaatctcgatgtcaagatgc 260
Query: 61 tggtcttggtaaaaacacaaggaaacaaacaaacaaacaaa-aaa-aatcacaataagtg 118
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 261 tggtcttggtaaaaacacaaggaaacaaacaaacaaacaaacaaacaatcacaataagtg 320
Query: 119 tggccacatatcctgaatttgagtttcttaagataatgggtaaagtgtttatttcttttc 178
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccatatatcctgaatttgagtttcttaagataatgggtaaagtgtttatttcttttc 380
Query: 179 attggatgtgagaattctgcattgttgaatgaaactgcaatcttaaagatgcttttcatt 238
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 attggatgtgagaattctgcattgttgaatgaaactgcaatcttaaagctgcttttcatt 440
Query: 239 tctttattttttctcaaataagaaagtattttatttaaggacaa-aaaa 286
| ||| ||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 441 tattt---ttttctcaaataagaaagtatattacttaaggacaacaaaa 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 694
Length adjustment: 9
Effective length of query: 286
Effective length of database: 685
Effective search space: 195910
Effective search space used: 195910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
