CACCATAATTTGCGGCTGCGAAACGAATCACNAGTCAAAACCGGGCGNGG
AATTCAGNCNTTACAATAACAGCGGAAAGNNNCTCTTTAATTTTATCTAT
TTGTTACTACAAAATATAAAATAGAATAATCAATTAGAGCAGTGATTTAA
AATAAACCAATTAAAGTGGAATACAATGTATGAAAATATATTAGGAAGTA
TTCAAATGTAGCATTATTTGCTTAACAGATGCAATTTGAAGTGCATGATC
TTTATAGTCCAACTACTGAAAGAAATTTGTAGCTTATTCTGAGCAAGTTC
ATGATTTGTTACATGGTTTCTAATTTGTATTTTTATTTATAAGGGACTAA
TGGAAACTTGACATTAATGTTTGCATGTTGTCTTTATAATTAGTTTTTAA
AAGGTACATTGTCCCCCCATTTTTGTGGGAGTCTGACTTCTGTTGGTTCT
GATTTTATTTTTGTTTTGATTGTACCTTCTTTTAATAATAGCTCAACATT
ACAAGAATGTATCCACATAAGAGACAACCAATTTCCTTTTCCTTTCTTAT
TTTTTTTAAAGCTCTTTACTAAACACTGGGTGTGATGCTTGTCATGGAAA
CACACTGCAACTGAATTAAATAAGTCTTCTATCCAAACGATGTAAAATTT
TAAATACTACTTTATATCCAAATATGGCTACACTGTTTATAGCTAAGTTT
GTCTACTCTGTGGTTTTGCATCTCTTTTTGATGATGATTAAGTGCA

NACGATGAAGTGGGATGCCGGGNAGGTGCCCGTTGCCTATTTGGAGGNGA
ANNANAGAATTATCAGCATCAGGCGTTANNNAGCTCTGNATCCCATTTTT
ATAGGGTTTTTTGGTTTCCCTCGGAGTCTAAGTTCTTGAGATGTTTGTAT
ATTTGGGATATTAGCCCTCTATTGGATGTAGAGTTGATAAATATCGTTTC
CCAATATATGGGTTGCAGTTTTGTCCACCTGACAGTGTCCTTTGCCTTTT
TTTTTAAAGAAATAGTCAACATCCTTAGTTATCAGGAAAATGCAAATCAA
AACGACCCTGAGATTCTTCCTCTTTCAGNCATAGNGATGAAGATCAAAAA
GGCATGTTTTAGCACATTCTGATAAGGATGTGGATGAAGAGAAACACTCC
TCCATTGTTGGCCCAACTACACGCTTGTATAAGCACTTTGGAAATCAGTC
TGGCTGTTCCTTAGAAAATTACACCTGAGGATGCAGCTATACCACTCCTA
GGCATATACCTAGAAGATGCTCTAACATATAACAAGGACACATGCTCCAC
TATGTTCATAGTTACCTTATTTATAATAGCCAAAAGCTGGAAACAACCCA
GATGTCCCTCAAGAGAAGGATGGATATAGAAAATGTGGTACATTTACACT
TTGTTTTACTACTCAGATATTAAAATCAGTAACTTCTTGGAATTTGGAGA
CAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAGT

Query= MSMg01no509_o14.b1 MSMg01no509_o14.b1 CHROMAT_FILE:
MSMg01no509_o14.b1 PHD_FILE: MSMg01no509_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:19 2005
         (623 letters)



>mm_chr1_149667121_149668142
          Length = 1022

 Score =  998 bits (516), Expect = 0.0
 Identities = 596/628 (94%), Gaps = 11/628 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaataatcaattagagcagtgatttaaaataaaccaattaaagtggaatacaatgtatga 60
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 gaataatcaattagaccagtgatttaaaataaaccaattaaagtagaatacaatgtatga 260

                                                                       
Query: 61  aaatatattaggaagtattcaaatgtagcattatttgcttaacagatgcaatttgaagtg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagatattaggaagtattcaaatgtagcattatttgcttaacagatgcaatttgaagtg 320

                                                                       
Query: 121 catgatctttatagtccaactactgaaagaaatttgtagcttattctgagcaagttcatg 180
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgatcacaatagtccaactactgaaagaaatttgtagcttattctgagcaagttcatg 380

                                                                       
Query: 181 atttgttacatggtttctaatttgtatttttatttataagggactaatggaaacttgaca 240
           |||||||||||||  ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 atttgttacatggggtctaaattgtatttttatttataagggactaatagaaacttgaca 440

                                                                       
Query: 241 ttaatgtttgcatgttgtctttataattagtttttaaaaggtacattgt-----cccccc 295
           ||||||||||||||||||||||||||| |||||||||||||||||||||          |
Sbjct: 441 ttaatgtttgcatgttgtctttataatcagtttttaaaaggtacattgttttgg-----c 495

                                                                       
Query: 296 atttttgtgggagtctgacttctgttggttctgattttatttttgttttgattgtacctt 355
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 496 atttttgtgggagtctgacttctgatggttctgattttatttttgtattgattgtacctt 555

                                                                       
Query: 356 cttttaataatagctcaacattacaagaatgtatccacataagagacaaccaatttcctt 415
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 556 cttttaataatagctcaaaattacaagaatttatccacataagagacaaccaatttcctt 615

                                                                       
Query: 416 ttcctttcttattttttttaaagctctttactaaacactgggtgtgatgcttgtcatgga 475
           ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 616 ttcctttctta-tttttttaaagctctttattaaacactgggtgtgatgcttgttatgga 674

                                                                       
Query: 476 aacacactgcaactgaattaaataagtcttctatccaaacgatgtaaaattttaaatact 535
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 675 aacacactgcaactgaattaaataagtcttctattcaaatgatgtaaaattttaaatact 734

                                                                       
Query: 536 actttatatccaaatatggctacactgtttatagctaagtttgtctactctgtggttttg 595
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 735 actttatatccaaatatggctacactgtttatagctaagtttgtctactttgtggttttg 794

                                       
Query: 596 catctctttttgatgatgattaagtgca 623
           ||||||||||||||||| ||||||||||
Sbjct: 795 catctctttttgatgattattaagtgca 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1022
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1012
Effective search space:   620356
Effective search space used:   620356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)