Query= MSMg01no510_a16.b1 MSMg01no510_a16.b1 CHROMAT_FILE:
MSMg01no510_a16.b1 PHD_FILE: MSMg01no510_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:31 2005
(621 letters)
>mm_chr1_29790233_29791253
Length = 1021
Score = 1154 bits (597), Expect = 0.0
Identities = 615/621 (99%)
Strand = Plus / Plus
Query: 1 aatagttgtgaatttattgtttgtttgtttgtttgtttgtttgttcttgtatcatcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagttgtgaatttattgtttgtttgtttgtttgtttgtttgttcttgtatcatcacac 260
Query: 61 ccaagattcttgtatgaacccatagaaacacaggatggtgaattcctaatgaaagtgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagattcttgtatgaacccatagaaacacaggatggtgaattcctaatgaaagtgaaa 320
Query: 121 cagactttctgactggctagtcagcagaggcctcatcaaatatttcctgtatggtactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagactttctgactggctagtcagcagaggcctcatcaaatatttcctgtatggtactga 380
Query: 181 aagagctagagcttccagaacacaaaagcattttaaaaagccaaacactctacaatcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagctagagcttccagaacacaaaagcattttaaaaagccaaacactctacaatcatt 440
Query: 241 cttttgtactgttaacaatgaggaggggagggagaggggaatgttgtactatccaatgaa 300
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtagtactgttaacaatgaggaggggagggagaggggaatgttgtactatccaatgaa 500
Query: 301 acttttctttcacaaactttggtcagcttttatattatttatgacagtgatcagaagcat 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 acttttctttcacaaactttggtcagcttttgtattatttatgacagtgatcagaagcat 560
Query: 361 ataatttagcctactcctaagttatttgaaatatggttgagagcttgctttgtttgttta 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 ataatttagcctactcctaagttatttgaaatatggttgggagcttgctttgtttgttta 620
Query: 421 aaagttagcatgacaggatccttacttacagtgataataaagttgctctatccacacaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagttagcatgacaggatccttacttacagtgataataaagttgctctatccacacaag 680
Query: 481 caggcatattttacgagaggacacaacttttaacttgatgctacctatcagtttttcttc 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 caggcatattttacgagaggacacaacttttaacttgattctacctatcagtttttcttc 740
Query: 541 tggtcaccagcagacactgggtggaagattttccttttatgaagcttattcttgaaaaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtcaccagcagacactgggtggaagattttccttttatgaagcttattcttgaaaaac 800
Query: 601 atgattcataagtttttgaga 621
|||||||||||||||||||||
Sbjct: 801 atgattcataagtttttgaga 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_a16.g1 MSMg01no510_a16.g1 CHROMAT_FILE:
MSMg01no510_a16.g1 PHD_FILE: MSMg01no510_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:31 2005
(646 letters)
>mm_chr1_29925104_29926149
Length = 1046
Score = 1180 bits (610), Expect = 0.0
Identities = 636/648 (98%), Gaps = 7/648 (1%)
Strand = Plus / Minus
Query: 5 aatttgtagcacccccagtagtaagaatactggagtagacaccagtattaagctacatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 aatttgtagcacccccagtagtaagaatactggagtagacaccagtattaagctacatag 881
Query: 65 ttaaagcagtttatgttggcttaaattccaaacgtccaaccacatatttttgagcaccat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ttaaagcagtttatgttggcttaaattccaaacgtccaaccacatatttttgagcaccat 821
Query: 125 caggaaaggagacaggaagaaagaagatttcacaatagaaatcacacattaagagtattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 caggaaaggagacaggaagaaagaagatttcacaatagaaatcacacattaagagtattc 761
Query: 185 cacaatgactttagaaaaaccaaccaaccaaccaaccaattacattaaaaaccgaaaact 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cacaatgactttagaaaaa-caaccaaccaaccaaccaattacattaaaaaccgaaaact 702
Query: 245 tttgaaactttcttcctgctgaaatgtttaatactttcgtgagataagtagggagaccta 304
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 701 caggaaactttcttcctgctgaaatgtttaatacttttgtgagataagtagggagaccta 642
Query: 305 gataaaaagtaaataactacaagcccaggagttgcacaaaatgcagtgatttactaaata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gataaaaagtaaataactacaagcccaggagttgcacaaaatgcagtgatttactaaata 582
Query: 365 ttttaagaaaaatggatgatcatacatttgagaaagtaatgcattttgggaagagctcct 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 581 ttttaagaaaaatggatgatcatacatttgagaaaataatgcattttgggaagagctcct 522
Query: 425 gggtacagcctatgtcagataccagtgactactttaaataacaaccaggaagggaactga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gggtacagcctatgtcagataccagtgactactttaaataacaaccaggaagggaactga 462
Query: 485 gaaatggatctgaatgggacagagtgaagtggag------gtatcaagggccttctgctc 538
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 461 gaaatggatctgaatgggacagagtgaagtggaggtattagtatcaagggccttctgctc 402
Query: 539 tcttttattattattaatatttttatgaaatgcttccaataagatacaatgatgcctaca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tcttttattattattaatatttttatgaaatgcttccaataagatacaatgatgcctaca 342
Query: 599 aacccatacctgaaaacaaactgcaggatatttgacagccccagcaat 646
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aacccatacctgaaaacaaactgcaggatatttgacagccccagcaat 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
