BAC Information

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BAC

Clone NameMSMg01-510A24
Chromosome1 (Build37)
Map Location 149,453,445 - 149,453,803
singlet/doubletsinglet
Overlap genenone
Upstream geneB830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510A24.T7 (MSMg01no510_a24.b1)MSMg01-510A24.TJ (MSMg01no510_a24.g1)
ACCAG583587AG583588
length767764
length of high quality
(start - end)		697 (48 - 744)686 (74 - 759)
definitionCHROMAT_FILE: MSMg01no510_a24.b1 PHD_FILE: MSMg01no510_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:32 2005CHROMAT_FILE: MSMg01no510_a24.g1 PHD_FILE: MSMg01no510_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATTGAATAGTTTCTTAGTCACGATTTTTATTCCTGCACAAAA
TATTGACCAAGAAGCAAGTGGAGGAGGAAAGGGTTTATTCAGCTTACACT
TCTACATTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGG
TCAGGAAGCAGGAGCTGATGCGATGGAGAGATGTTATTTACAGGCTTGCT
TCCCCTGACTTGCTCAGCTTAATTTCTTATAGAGCCCAGGACTGCCAGCT
GAGGCTGGCACAACCCATAATGGGCCCTCCATCCTTCATCACTAATTGAG
AAAATTCCTTACAGCTGGATCTCCTGGAGGCATTTTCTCAAGGGAGGCTC
CTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACAAAACCAGC
CAGTACAAATCACAGTTTAAAAGTGCCATTACAATTTGGTGTCATTTGAT
CAAAACGTAACTTTATTTTGTACTGACCATGACTGTATGTTTTATTGCTG
TGTTGTGTTTTGTTTTGCTTTGCTATATTTTTTTAGGAAACTCCAAACTC
ATTTCAAAGTGACTTCACTCCTGGCACTTTGACCAATGGTATGAAAGATT
TTTGTTGTTCTTTTTATTTTATTGTATTTTCCCCCTACCTGCATTTGTTT
TTAAACTATATTTTACTTGAAATTCTAAAATGGTTACATATTCCTTTAAA
TATTATAGTCTTTTCCA

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAAAAACGGAAACTATTAGAAAAAAA
AGACTAATATTAAAAGACATTACATTTTGGTATATCATGGTTTATGTGTA
TGCAGGCACACAACAGAAGAATACCTAGGGCATTTTGCAGTTTAACTTCT
TTTCTCTTTTTTTTTGTTAGATATTTTCTTTATTAACATTTCAAATGTTA
CCTCTGTTCCTGGTTTTCTCTCTGAAATTCCCCTCAGCCTATCACCTCAC
TGTTCTTTCTGCTCACCAACCCATCTCTCTCCCACTTCCTGGCCCTGGCA
TTCCCCTACACTAGGTCATAGAACATAGGACCAAGGTCTTCTCCTCCTAT
TGATGTTCAACTAGGCCATCCTCTGCTACATATGCTGCTGGAGCCATGAG
TCTCACCCATGTATTCTCTTTGGTTTGTGGTTTATTCCCTGGGAGCTCTG
GGGGTACTGATTAGCTCATATTATTGTTCCTCCTATGGGTCTGCAAACCC
TTTCAACTTCTTAGGTCCTTTCTCTAGATCCTTCATTGGGGACCCTATGT
TAAGTCCAATAAATGGTTGTGAGCATCTACTTCTGTATTTGTCAGAGCCT
GGCAGAGCCTCTTAGGAGAGAGCTATATAAGGCTCCTCTCAGCAAGCACT
TGTTGGCATCCACAATAGTGACTGGATTTGTATATGCGATGGATCCCCAG
GTGGGGTATTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_a24.b1 MSMg01no510_a24.b1 CHROMAT_FILE:
MSMg01no510_a24.b1 PHD_FILE: MSMg01no510_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:32 2005
         (697 letters)



>mm_chr1_149452708_149453803
          Length = 1096

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%), Gaps = 1/360 (0%)
 Strand = Plus / Minus

                                                                        
Query: 338  ttctcaagggaggctcctttctctgtgataactccagcttgtgtcaagttgacacacaaa 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 ttctcaagggaggctcctttctctgtgataactccagcttgtgtcaagttgacacacaaa 1037

                                                                        
Query: 398  accagccagtacaaatcacagtttaaaagtgccattacaatttggtgtcatttgatcaaa 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 accagccagtacaaatcacagtttaaaagtgccattacaatttggtgtcatttgatcaaa 977

                                                                        
Query: 458  acgtaactttattttgtactgaccatgactgtatgttttattgctgtgttgtgttttgtt 517
            || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 976  acataactttattttgtactgaccatgactgtatgtttcattgctgtgttgtgttttgtt 917

                                                                        
Query: 518  ttgctttgctatatttttttaggaaactccaaactcatttcaaagtgacttcactcctgg 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  ttgctttgctatatttttttaggaaactccaaactcatttcaaagtgacttcactcctgg 857

                                                                        
Query: 578  cactttgaccaatggtatgaaagatttttgttgttctttttattttattgtattttcccc 637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 856  cactttgaccaatggtatgaaagatttttgttgttctttttattttattgtattt-cccc 798

                                                                        
Query: 638  ctacctgcatttgtttttaaactatattttacttgaaattctaaaatggttacatattcc 697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797  ctacctgcatttgtttttaaactatattttacttgaaattctaaaatggttacatattcc 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1096
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1086
Effective search space:   746082
Effective search space used:   746082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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