BAC Information

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BAC

Clone NameMSMg01-510B23
Chromosome1 (Build37)
Map Location 135,241,990 - 135,242,685
singlet/doubletsinglet
Overlap genenone
Upstream geneTmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1
Downstream geneLOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510B23.T7 (MSMg01no510_b23.b1)MSMg01-510B23.TJ (MSMg01no510_b23.g1)
ACCAG583633AG583634
length752767
length of high quality
(start - end)		678 (73 - 750)573 (74 - 646)
definitionCHROMAT_FILE: MSMg01no510_b23.b1 PHD_FILE: MSMg01no510_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:37 2005CHROMAT_FILE: MSMg01no510_b23.g1 PHD_FILE: MSMg01no510_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTCCCTTTCAAAACACAAAGCAGACTTTGAATATCGCTTGTCCC
TCCCTCCAGTGTCTCCAGGCCACCACAGTCCCCATCCAAACTATCATGGA
GGAAGATGGGATTAGAACCAGGCAAAGACCAGGCCTTGACATCCTTGGCT
GTTAAAGCCCTGCCCCCAGTCCTGGCCATACTGACCAAGGCTTCCAAACA
CAGAGGGGAAGGCTGGGCTCAGCTAGATTTATGCCTGTTTTGCTTGGTTC
TCACATCTACCCTGCCCCATGGGCAGAGAGTGGGTCAACAAAATCCTCTC
CTCTGCCCCTGATCTGCAATACTTCCCTGACCTTGACCTCCAGATGAGGC
GATACAGCTTGGTCCTAGAAATGGCATCATGGGGAGTTTCTATGAGAAGA
GTTAGACCTTTGGACGAAGGGCCTGGGAGATGGCCTGATAAGAGTCTTAA
ACATTCTCTGCCCTATGATCCAAGATGCCAGAAGGTCCAAGGCGAAGAGG
GCCTGGCTAAGCTACCCCCTCCCCAACAGTGGAAATGGAAGAGACTCATG
GGCTGAGTCAAGACAGACAGAATCAACTGGATCCCTGGAAGGCCCTCAGT
CAGCTCCCTTCCTCCCACCTGGGAAGCCTCCTAGGTTCTGCACACCAGCC
TCAGTGAGGCCATGGAGGGTCGCAGGGTACTCACATGGCTCCAGGCATCC
AT

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCAGGATTCCATCCAGGCATGGTCTT
TCTTTGTTTGTTTGTTTAAAATTACTGTTTGAACTGTTTACTTAATCTTG
GCTTAATTTTGGTAGGTCATAGACATCTAGAAAGATATCCATTTCTTTTG
TATTTTTCCTGTTTAGGAGCGTATGAGTTTTTGAGGGACATCCTTATAAC
TTGCTGAGTGTTGTTAGTATGTATTGTTTTGTTTTTGAGACAGGGTCTCC
CTAATGGAGTCTCTGTGGCCTGTTTCTTAGGATGTAGACCAGCCTGGCCT
TGAACTGATACCAATGCTGCCTATGCTTCTGAGATTAAGTGTGCACCATC
ACACCTGGCTGGCTGCTCTCTATTGTAAAGTCTCTCTTCATTTCTAATGT
TACTAATTTGAGTCTTTTCTCCTTTTTTTGTTTATTTCATTAATTTCTTA
AGAATTTCTCAACCTTATTTCTTTTTTCAAAGAACCAACATTTTCTCTTC
TTCCTTGTTTTGTATTTCTTTTCATTAATTTCTGTCCTGATTTGATTCTT
TATTGCCATTATTGTTGTATTTGGTTTATTTCTGTCTTTACAAGGCCCTA
GAGTGCATCCCTGTTATCTTTTCAGATCTCTGCTATGGTTTTTGGTTTTT
GTTTTTTGTTTTTTAATGTAGGCACTTAAGCCCATTACCTTCCCCACTCA
GGACTCTTCTCATTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_b23.b1 MSMg01no510_b23.b1 CHROMAT_FILE:
MSMg01no510_b23.b1 PHD_FILE: MSMg01no510_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:37 2005
         (678 letters)



>mm_chr1_135241808_135242885
          Length = 1078

 Score = 1162 bits (601), Expect = 0.0
 Identities = 665/697 (95%), Gaps = 20/697 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcagactttgaatatc-gcttgtccctccctcca-----gtgtctccaggccaccac 54
           ||||||||||||||||| | ||| |||||||||||||     ||||||||||||||||||
Sbjct: 183 aaagcagactttgaata-ctgctagtccctccctccattccagtgtctccaggccaccac 241

                                                                       
Query: 55  agtccccatccaaactatcatggaggaagatgggattagaaccaggcaaagaccaggcct 114
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 242 agtccccatccaaactatcacggaggaggatgggattagaaccaggcaaagaccaggcct 301

                                                                       
Query: 115 tgacatc-------------cttggctgttaaagccctgcccccagtcctggccatactg 161
           |||||||             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgacatcactggagagatcccttggctgttaaagccctgcccccagtcctggccatactg 361

                                                                       
Query: 162 accaaggcttccaaacacagaggggaaggctgggctcagctagatttatgcctgttttgc 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 362 accaaggcttccaaacacagaggggaaggctgggctcagctagatttatgcctcttttgc 421

                                                                       
Query: 222 ttggttctcacatctaccctgccccatgggcagagagtgggtcaacaaaatcctctcctc 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttggttctcacatctaccctgccccatgggcagagagtgggtcaacaaaatcctctcctc 481

                                                                       
Query: 282 tgcccctgatctgcaatacttccctgaccttgacctccagatgaggcgatacagcttggt 341
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 482 tgcccctgatctgcaatacttccctgaccttgacctcgagatgaggcgatacagcttggt 541

                                                                       
Query: 342 cctagaaatggcatcatggggagtttctatgagaagagttagacctttggacgaagggcc 401
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 542 cctagaaatggcatcatggggagtttctatgagaagagttagacctttggacaaagggcc 601

                                                                       
Query: 402 tgggagatggcctgataagagtcttaaacattctctgccctatgatccaagatgccagaa 461
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 602 tgggagatggcctgataagagtcttaaacattctttgtcctatgatccaagatgccagaa 661

                                                                       
Query: 462 ggtccaaggcgaagagggcctggctaagctaccccctccccaacagtggaaatggaagag 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 662 ggtccaaggcgaagagggcctggctaagctaccccctccccaacagtggaaatggcagag 721

                                                                       
Query: 522 actcatgggctgagtcaagacagacagaatcaactggatccctggaaggccctcagtcag 581
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 722 actcatgggctgagtcaagacagacagaatcaactggatccctggaaggctctcagtcag 781

                                                                       
Query: 582 ctcccttcctcccacctgggaagcctcctaggttctgcacaccagcctcagtgaggccat 641
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 782 ctcccttcctcccacctgggaagcctcctaggttctgcgcaccagcctcggtgaggccat 841

                                                
Query: 642 ggagggtcgcagggtactcacatggctccaggcatcc 678
           |||||||||||||||||||||||||||||||||||||
Sbjct: 842 ggagggtcgcagggtactcacatggctccaggcatcc 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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