Query= MSMg01no510_d07.b1 MSMg01no510_d07.b1 CHROMAT_FILE:
MSMg01no510_d07.b1 PHD_FILE: MSMg01no510_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:43 2005
(657 letters)
>mm_chr1_51725215_51726271
Length = 1057
Score = 1135 bits (587), Expect = 0.0
Identities = 639/657 (97%), Gaps = 2/657 (0%)
Strand = Plus / Plus
Query: 1 cagtgacacaaactcagttctgccatagactttcattaagcataaaatagaaatggcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgacacaaactcagttctgccatagactttcattaagcataaaatagaaatggcaat 260
Query: 61 aaccctaatataaacagttgaatcgtcttaaaataatttaactatttggggaggggcaca 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aaccctaatataaacagttgaatcgtcttaaaataatttaactctttggggaggggcaca 320
Query: 121 cagagttcaagacaacgtttctccgtgtcaaggcagttcttgaactcactctgtagacca 180
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 cagagttcaagacaaggtttctccgtgtcaaggcagttcttgaactcactgtgtagacca 380
Query: 181 ggctgtcctgggactaacagagatcccgcttgcctctgactcccaggtactgggattaaa 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgtcctgggactaacagagatcccacttgcctctgactcccaggtactgggattaaa 440
Query: 241 gatgtgctttaccacacctgggtcattctctccttaggcactaaatttcacaggcagagc 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgtgcaccaccacacctgggtcattctctccttaggcactaaatttcacaggcagagc 500
Query: 301 tttagttttacaaagtgctggaagaaaaggttaattcaaagtacttgtacgattcaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tttagttttacaaagtgctggaagaaaaggttaattcaaagtacttgtatgattcaaaga 560
Query: 361 agtaaaactttttttttctttttttttttttttagctagtactttctgttcttgggccaa 420
|||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct: 561 agtaaaac--tttttttctttctttcttttttaagctagtactttctgttcttgggccaa 618
Query: 421 gaaagacaatggagtaacagggcctctgaagtttccctttcctctgtggaaaactgtagc 480
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 619 gaaagacaatggagtaacagggcctctgaagcttccctttcctccatggaaaactgtagc 678
Query: 481 aaaccatgaaacttattccacaagggggagtcaggctcatgctgaatttacttagggaag 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 679 aaaccatgaaacttattccacaagggggagtcaggctcatgctgaatttccttagggaag 738
Query: 541 ccaaaaagggaaatgtagggagaatctcttataagcatcacctgtcaataaaaaaagcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccaaaaagggaaatgtagggagaatctcttataagcatcacctgtcaataaaaaaagcct 798
Query: 601 atgaccaatgagctgaggcaagaaataggaggtgggacactgacaggaagagagagg 657
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 799 atgaccaatgagctgaggcaagaaataggaagtgggacactgacaggaagagagagg 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_d07.g1 MSMg01no510_d07.g1 CHROMAT_FILE:
MSMg01no510_d07.g1 PHD_FILE: MSMg01no510_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:43 2005
(599 letters)
>mm_chr1_51894458_51895457
Length = 1000
Score = 1087 bits (562), Expect = 0.0
Identities = 589/598 (98%), Gaps = 3/598 (0%)
Strand = Plus / Minus
Query: 4 agggtggttgaaatgctctgggattcgggatcacatgggagggaatgccagtttgagagc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agggtggttgaaatgctctgggattcgggatcacatgggagggaatgccagtttgagagc 741
Query: 64 cttggaggatgagcacttgaaactggatggtggaatcatttatctgagttcaggagattt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttggaggatgagcacttgaaactggatggtggaatcatttatctgagttcaggagattt 681
Query: 124 ttctgaaacagattctcttctgttaaaccctagttaagggagcgatccaactgcgagtgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttctgaaacagattctcttctgttaaaccctagttaagggagcgatccaactgcgagtgc 621
Query: 184 tcggaacagactgggtgtgttttccagccacccatttgggcagagctggagacactgaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcggaacagactgggtgtgttttccagccacccatttgggcagagctggagacactgaaa 561
Query: 244 cccgttctactcttgggcctgtgtgtctgggtatcggtggtgtcacggtgaagcgaatag 303
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 cccgggctactcttgggcctgtgtgcctgggtatcggtggtgtcacggtgaagcgaatag 501
Query: 304 ctcagtcttttctgctctgcac-tcgaggtgaaacaaacttggcaaggaaatggcagggt 362
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 500 ctcagtcttttctgctctgcacat-gaggtgaaacaaacttggcaaggaaatggcagggt 442
Query: 363 ggagagcagagagtgtggagaaggaagccctgccattcccctgatgaccacgtgggcagc 422
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ggagagcagagagtgtggagaaggaagccctgccattcccctgatggccacgtgggcagc 382
Query: 423 accactatgattagcactctcgagtagaaataaggcagaggaaggacataaataccagct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accactatgattagcactctcgagtagaaataaggcagaggaaggacataaataccagct 322
Query: 483 gggctctttgcagcatgcaacccaccattctaccctcatagaaaatgactgatgagcccc 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gggctctttgcagcatgcaacccaccattctaccctcatagaaaatgacagatgagcccc 262
Query: 543 aaaccaaactttt-gaaactgaatcatggtaatagtcagagctgtttcaaaatgcaca 599
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aaaccaaactttttgaaactgaatcctggtaatagtcagagctgtttcaaaatgcaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1000
Length adjustment: 10
Effective length of query: 589
Effective length of database: 990
Effective search space: 583110
Effective search space used: 583110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
