BAC Information

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BAC

Clone NameMSMg01-510F15
Chromosome1 (Build37)
Map Location 84,139,741 - 84,140,411
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream geneLOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510F15.T7 (MSMg01no510_f15.b1)MSMg01-510F15.TJ (MSMg01no510_f15.g1)
ACCAG583808AG583809
length745746
length of high quality
(start - end)
396 (321 - 716)673 (74 - 746)
definitionCHROMAT_FILE: MSMg01no510_f15.b1 PHD_FILE: MSMg01no510_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:55 2005CHROMAT_FILE: MSMg01no510_f15.g1 PHD_FILE: MSMg01no510_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCATXXXXXXXXXXXXXXXXXXXXXXXXXXTATACGACAGGAGGCGCGG
AATTCCTACTGTCCCTCAAATTTGTCGGCTTCAAGGATTTTCTGGGACAT
TGGAACACTGATGAAGGCTTAGCTATGTCGGAATTAAATCTTAAAAGGCA
CTTATAATAAAATAATACTAAAAGAGAGCATGTGGATCCATACACCAGAC
TAATTCGGGGATAGGGTATGAGTATTCGGGTTATGAGAATGCCAAGGTTC
CAGGAGGTGAGTTTCTCTGAAACTCTTTGCCTCCTGAGTGCTTCCAGGCG
CCTCGGCCTGTCAAGTTTACTTCACTGGAGTGTGCATAGCAAAGGGCCTA
GAGTTATGTCTCTGTCAACATGTGTATTAGGGATTCTTTAAAAAAAAAAA
GTCAGCCGGGCATGGTGGCACACGACTTTAATCCCAGCACTCGAGAGGCA
GAGGCAGGTGGATTTCTGAGTTCAAGACCAGCCTGGTCTACAAAGTGAGA
TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAACAAAA
AAACAAAACCAAAAACAAACAAACAAACAAACAAACAAAAACCAAAAAAA
AACCAACAACAAAAAACGAAAAGAAAAAAAGTCAATAGATTTCAATTCTA
CAGTTCCTTTCTTTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCCTC
TTTTTTTCTCCATCATGTCAGTCTCTTTTTTTACTTCTGTCTCTG
CGATGCAGTGGGAGGTCTGGNGGCCGCCTGGCCTCANAAACAGGGTGAAC
TATAGAAGGTTCCCGAAAACGAGTAGCCTTAAAATAGCAAGCTGGCATTG
CTCAGTCTTTTCCTCCATGCAGAGGTACCTCTCATGCAAACAGTGAATGG
GACACTAGGGAAAAGAAACAGTATTGAGAGAGCTCACTCAGAAATGTATA
AACAAGAAAATCTTGACGGATTATAGTTGAATAAACTAGAGTTTTGTTTT
GAAAGTTGTTAACAACCTTCTTAGAGTCTCTAAAAAGATGTGCAGCACAC
ACTTGCTTTGTTATGTGGTGNTTCTGCGAGCTGACTAAACATCAGAATTT
ACCATACAGGAACTATATTTTATCCACAGAATAAATGCAAGAAACACGCA
GAATCATTAACAAGCTTTCTGAAGAAGTAAGTTCAAGATTCAGATAATAA
TTAAACTAAAATATTCAAATCCAAGCCAACAAATTGTTTGAAATGAATGG
TCCAAACATGAACTCTCTGAAAGGCTGGGTAACTTCCTACTAAAGGGCTT
TCCTCAGGCTTTCCATTGTGAACATATTTTCCATCTCCATCCTGCTTTCA
AAATGATGCTTTAAGACTTTCTGGGAATGGCCAGCAAAGCACCAACCCAC
ACCTCTGTGTTAGAGCTATGAAGTTGGGGTTTGGTTTGTTTGTTTTTTTT
ATTTTGTTTTCTGCAAATGTTTAACATGCTTAACATACTTAACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_f15.g1 MSMg01no510_f15.g1 CHROMAT_FILE:
MSMg01no510_f15.g1 PHD_FILE: MSMg01no510_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:55 2005
         (673 letters)



>mm_chr1_84139541_84140611
          Length = 1071

 Score = 1191 bits (616), Expect = 0.0
 Identities = 658/675 (97%), Gaps = 6/675 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagccttaaaatagcaagctggcattgct--cagtcttttcctccatgcagaggtacctc 58
           |||||||||||||||||||||||||||||  |||||||||||||||  ||||||||||||
Sbjct: 201 tagccttaaaatagcaagctggcattgctcacagtcttttcctccacacagaggtacctc 260

                                                                       
Query: 59  tcatgcaaacagtgaatgggacactagggaaaagaaacagtattgagagagctcactcag 118
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatacaaacagtgaatgggacactagggaaaagaaacagtattgagagagctcactcag 320

                                                                       
Query: 119 aaatgtataaacaagaaaatcttgacggattatagttgaataaactagagttttgttttg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgtataaacaagaaaatcttgacggattatagttgaataaactagagttttgttttg 380

                                                                       
Query: 179 aaagttgttaacaaccttcttagagtctctaaaaagatgtgcagcacacacttgctttgt 238
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 aaagttgttaacaaccttcttagagtctctaaaaagatgtgcagcgcacacttgctttgt 440

                                                                       
Query: 239 tatgtggtgnttctgcgagctgactaaacatcagaatttaccatacaggaactatatttt 298
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgtggtgtttctgcgagctgactaaacatcagaatttaccatacaggaactatatttt 500

                                                                       
Query: 299 atccacagaataaatgcaagaaacacgcagaatcattaacaagctttctgaagaagtaag 358
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 501 atccacagaataaatgcaagaaacacgcagaatcattaacaaactgtctgaagaagtaag 560

                                                                       
Query: 359 ttcaagattcagataataattaaactaaaatattcaaatccaagccaacaaattgtttga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ttcaagattcagataataattaaactaaaatattcaaatccaagccaacaaattgcttga 620

                                                                       
Query: 419 aatgaatggtccaaacatgaactctctgaaaggctgggtaacttcctactaaagggcttt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgaatggtccaaacatgaactctctgaaaggctgggtaacttcctactaaagggcttt 680

                                                                       
Query: 479 cctcaggctttccattgtgaacatattttccatctccatcctgctttcaaaatgatgctt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcaggctttccattgtgaacatattttccatctccatcctgctttcaaaatgatgctt 740

                                                                       
Query: 539 taagactttctgggaatggccagcaaagcaccaacccacacctctgtgttagagctatga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | |    |
Sbjct: 741 taagactttctgggaatggccagcaaagcaccaacccacacctctgtgttacaac----a 796

                                                                       
Query: 599 agttggggtttggtttgtttgttttttttattttgttttctgcaaatgtttaacatgctt 658
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agttggggtttggtttgtttggtttttttattttgttttctgcaaatgtttaacatgctt 856

                          
Query: 659 aacatacttaacaac 673
           |||||||||||||||
Sbjct: 857 aacatacttaacaac 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1071
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1061
Effective search space:   703443
Effective search space used:   703443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)