BAC Information

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BAC

Clone NameMSMg01-510H16
Chromosome1 (Build37)
Map Location 7,454,622 - 7,454,978
singlet/doubletsinglet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
Downstream geneLOC665063, LOC665069, LOC100039408, Sntg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510H16.T7 (MSMg01no510_h16.b1)MSMg01-510H16.TJ (MSMg01no510_h16.g1)
ACCAG583906AG583907
length745752
length of high quality
(start - end)
608 (74 - 681)357 (326 - 682)
definitionCHROMAT_FILE: MSMg01no510_h16.b1 PHD_FILE: MSMg01no510_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:04 2005CHROMAT_FILE: MSMg01no510_h16.g1 PHD_FILE: MSMg01no510_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGG
AATTCTTTGTTCTTTCCTGAGACCCATTTTTTAATGGGTTATTTGATTTT
CTGGAGTCTACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATG
AGGTCCCATTTATCGATTTTGATCTTACAGCACAAGCAATTGCTGTTCTA
TTCAGGATTTTTCCCCTGTTTTTTATCTTCAAGGCCTTTCCCTACTTTCT
CTGCTATAAGTTTCAGTGGCTCTGGTTTTATGTGGAGTTCCTTAATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCAATAT
TCTACTTGATAGCAGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT
CTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTTGTCTAC
TTGTCTGTCACTATACCAGTACCATGCACTTTTTATCACAGTTGCCTTGT
AGTACAGCTTTAGGTGGGGCATGGTGATTCCACCAGAGGTTCTTTTATCC
TTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTTGTTATTCTAGAA
TCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCAGAAATTCAACAGATTGCCACAGGGTAGGCCTTCA
CCTTAAAGAGATGTGCCTGAAACTTCCAAAGAAGGCCTTTTCTCCTTCAG
CCTGTCTGGTACTCTCAGCACTCACTCCCAATCAGACCTGGTTCTGCTTG
TCTTTACTCTGCCTTCCCTCTCTCAGCCTACTACACAAAGGGAATTCTAG
ATATGTAGACTTCAGTTCCTGCCTCCCAGCAGAACCTCACAATATGACAA
ATATTCATGCCATCAATGNAATTTGTATGAAAATCATAGGAATCAGCAAA
CCACACTCAATAATATTACAAACATAAATTCTCCCGTTAAAAGGAGCATA
AGCTAGGAGTGATAATTACATACCCAAAATTTAAATCCCAAAATTTAAGA
GACTGAACCATGAGAATTGCAATAATTTAGGCTGATGTATACTATAGGCT
ATGCTGTGTTTTCAAAATATGGAAGAGTGCTTCTTAGTAAAATAGTCAAC
TACAAGCTGCCTCTTGTGATCCTATTAATAAGTTTTATTCCTATCTAGAT
GTAAATTGTATAGATTACAACAATGACTAGACCAGCAGTGTGTCTACAAT
GGTGCAATAGAGACACCAATTTTCCCCTTGAGGGTTGTCTTAGTTACTTT
TCTATCATTGTGAAGAGTCACTGTGACAAAAGCAACTGATAAAAAAAGTT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_h16.g1 MSMg01no510_h16.g1 CHROMAT_FILE:
MSMg01no510_h16.g1 PHD_FILE: MSMg01no510_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:04 2005
         (357 letters)



>mm_chr1_7454422_7455178
          Length = 757

 Score =  652 bits (337), Expect = 0.0
 Identities = 352/357 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgaaaatcataggaatcagcaaaccacactcaataatattacaaacataaattctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 557 tatgaaaatcataggaatcagcaaaccacactcaataatattacaaacataaattctcct 498

                                                                       
Query: 61  gttaaaaggagcataagctaggagtgataattacatacccaaaatttaaatcccaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gttaaaaggagcataagctaggagtgataattacatacccaaaatttaaatcccaaaatt 438

                                                                       
Query: 121 taagagactgaaccatgagaattgcaataatttaggctgatgtatactataggctatgct 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taagaggctgaaccatgagaattgcaataatttaggctgatgtatactataggctatgct 378

                                                                       
Query: 181 gtgttttcaaaatatggaagagtgcttcttagtaaaatagtcaactacaagctgcctctt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgttttcaaaatatggaagaatgcttcttagtaaaatagtcaactacaagctgcctctt 318

                                                                       
Query: 241 gtgatcctattaataagttttattcctatctagatgtaaattgtatagattacaacaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtgatcctattaataagttttattcctatctagatgtaaattgtatagattacaacaatg 258

                                                                    
Query: 301 actagaccagcagtgtgtctacaatggtgcaatagagacaccaattttccccttgag 357
           |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 257 actagaccagcagtgtgtcttcaatggtgcaatagagacaccaatgttccccttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)