BAC Information

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BAC

Clone NameMSMg01-510H24
Chromosome1 (Build37)
Map Location 173,934,622 - 173,935,208
singlet/doubletsinglet
Overlap geneVangl2
Upstream geneFcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
Downstream geneLOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510H24.T7 (MSMg01no510_h24.b1)MSMg01-510H24.TJ (MSMg01no510_h24.g1)
ACCAG583922AG583923
length772774
length of high quality
(start - end)		687 (47 - 733)588 (77 - 664)
definitionCHROMAT_FILE: MSMg01no510_h24.b1 PHD_FILE: MSMg01no510_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:06 2005CHROMAT_FILE: MSMg01no510_h24.g1 PHD_FILE: MSMg01no510_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGNAAATCCGCGGA
ATTCAGAACTCTTTACCTGGGGAACAGGGTACCTGTAAGTATAGCTTTAC
AAGGTATGTCTGGCCTTGAACTTTCTAATGAAATTCAAGACAGTCTATCA
GAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTC
TCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGTGGTTA
AGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTA
AAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGCGCAAAAAATAA
GTATACAGGCCTTTCCAAGGGTCTTGAACCTGAGGAAAAGTTTAGGTCAG
GTAAGAATACCTGGGGAGAGATTGGAAGGAAGGAGAAGGAAAAAGAAAAG
AAAAAAGATCAATTAGCGGAGGTTTCTAGGAGAAGGAGCCTATACTCATC
ACTAGGTGAGCTCAAGGAGCCAGTTCTTAATAGTTCTGAATCAGATGAAA
AGGCTATTAGGGCCTGGAAGGCGCTCTCCCAAGCAGGTGAAGCCACTGGA
CAACTAACAAAGATCGTCCAGGGACCTCAGGAGTCCTTCTCAGATTTTGT
GGCCAGAATGACAGAGGCAGCAGAGCGTATTTTTGGAGATTCAGAGCAAG
CCGCACCTCTGGTAGAATAGCTCATTTATGAGCAAGCCACGCANGAATGC
AGAGCGGTCATAGCCTCAAGAA

CATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCCGAATTCCAGTCCTGACTGGAGCTGTATCACTTC
TGTGCATGTCATTGTCCCCATCAATATATTAGGAGTCTCTGGCTGTCTTC
TGCACTCACATTTGAAGATACCAGTTCATGGGTATAGAATGAGCTTAGAA
ACACCCTAGCTATCTTAGAAAGCTGTGTCACAGAGGATGAAGGGTGGGTG
GGTGCACGAGATGCCCCAACAGTATCTTCTCCCTTCCTCAGGCCTTCCTG
GAGCGATATTTGGCTGCTGGACTTCTTCTTCCAGTACCACAAGGAACGTT
GGCTGGCCAAACAGTGGACCTTGGTGAGCGAGGAGCCGGTGACCAATGGG
CTTAAGGATGGCATCGTGTTCCTCTTGAAGCGCCAGGACTTCAGCTTGGT
AGTGAGCACCAAGAAGGTGCCCTTCTTCAAACTCTCTGAGGAATTTGTGG
ATCCCAAGTCACATAAGTTCGTCATGCGGCTGCAGTCGGAGACCTCTGTG
TGACTTTTGCAGCAGCCGCGGAGGAGGGATGTGGGGGGTTCCTGCGGAGT
GGGAGGGGCTTGGTTCTCTGGCCCTGACACATTTCTGCCAGTCCTACTTC
CTCTTGCTCTTGTTTGTTTTTGGTTTTTGGTTTTTGTTTTTTTTTTACTT
GAATTAACTTATCCTGTACCCAGTCTCCCCCTCTCCTTCAGTTTTCTCAT
CTGGAAATCTGGAGATAAATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_h24.g1 MSMg01no510_h24.g1 CHROMAT_FILE:
MSMg01no510_h24.g1 PHD_FILE: MSMg01no510_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:06 2005
         (588 letters)



>mm_chr1_173934422_173935408
          Length = 987

 Score = 1098 bits (568), Expect = 0.0
 Identities = 583/588 (99%), Gaps = 1/588 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgactggagctgtatcacttctgtgcatgtcattgtccccatcaatatattaggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tcctgactggagctgtatcacttctgtgcatgtcattgtccccatcaatatattaggagt 728

                                                                       
Query: 61  ctctggctgtcttctgcactcacatttgaagataccagttcatgggtatagaatgagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ctctggctgtcttctgcactcacatttgaagataccagttcatgggtatagaatgagctt 668

                                                                       
Query: 121 agaaacaccctagctatcttagaaagctgtgtcacagaggatgaagggtgggtgggtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agaaacaccctagctatcttagaaagctgtgtcacagaggatgaagggtgggtgggtgca 608

                                                                       
Query: 181 cgagatgccccaacagtatcttctcccttcctcaggccttcctggagcgatatttggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cgagatgccccaacagtatcttctcccttcctcaggccttcctggagcgatatttggctg 548

                                                                       
Query: 241 ctggacttcttcttccagtaccacaaggaacgttggctggccaaacagtggaccttggtg 300
           ||||||  |  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctggac-ccaccatccagtaccacaaggaacgttggctggccaaacagtggaccttggtg 489

                                                                       
Query: 301 agcgaggagccggtgaccaatgggcttaaggatggcatcgtgttcctcttgaagcgccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agcgaggagccggtgaccaatgggcttaaggatggcatcgtgttcctcttgaagcgccag 429

                                                                       
Query: 361 gacttcagcttggtagtgagcaccaagaaggtgcccttcttcaaactctctgaggaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gacttcagcttggtagtgagcaccaagaaggtgcccttcttcaaactctctgaggaattt 369

                                                                       
Query: 421 gtggatcccaagtcacataagttcgtcatgcggctgcagtcggagacctctgtgtgactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtggatcccaagtcacataagttcgtcatgcggctgcagtcggagacctctgtgtgactt 309

                                                                       
Query: 481 ttgcagcagccgcggaggagggatgtggggggttcctgcggagtgggaggggcttggttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttgcagcagccgcggaggagggatgtggggggttcctgcggagtgggaggggcttggttc 249

                                                           
Query: 541 tctggccctgacacatttctgccagtcctacttcctcttgctcttgtt 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tctggccctgacacatttctgccagtcctacttcctcttgctcttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space:   564706
Effective search space used:   564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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