Query= MSMg01no510_j04.b1 MSMg01no510_j04.b1 CHROMAT_FILE:
MSMg01no510_j04.b1 PHD_FILE: MSMg01no510_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:11 2005
(684 letters)
>mm_chr1_70290744_70291827
Length = 1084
Score = 1218 bits (630), Expect = 0.0
Identities = 669/682 (98%), Gaps = 2/682 (0%)
Strand = Plus / Minus
Query: 4 ggaatttattgattcc-tctggcttttcctgaagtccaaaatgaccagtgagtagaggcc 62
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ggaatttatcga-tccatctggcttttcctgaagtccaaaatgaccagtgagtagaggcc 826
Query: 63 tttaaatttctttgaaatgctttaaactttgataataatataccccaaaatagaatgaaa 122
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tttaaattcctttgaaatgctttaaactttgataataatataccccaaaatagaatgaaa 766
Query: 123 atgaaggctaagaagccagagatttatcctggcttcagctcttttgtaaatccaactgag 182
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 765 atgaaggctaagaagccagagatttatcctggcttcagctctcttgtaaatccaactgag 706
Query: 183 tggatatgttttatcagaagtcgtgtctaagtgcatgttactacgtagtaaaggaagtct 242
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tggatatgttttattagaagtcgtgtctaagtgcatgttactacgtagtaaaggaagtct 646
Query: 243 aaccaatgtgtatgaaatatattccatcttattaatccttttatttaaaataggtgacct 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 645 aaccaatgtgtatgaaatatattccattttattaatccttttatttaaaataggtgacct 586
Query: 303 ttaaatttctgtaagcaaatcaacttgcagaagtccaaaaacagtttagaaactctctaa 362
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttaaatttctgtaggcaaatcaacttgcagaagtccaaaaacagtttagaaactctctaa 526
Query: 363 catatggtatctagccaaagacaacaattctgaaacagtttcttttttaaaactttgtac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 catatggtatctagccaaagacaacaattctgaaacagtttcttttttaaaactttgtac 466
Query: 423 ggtaattttccttaaaagaggacatgcttcagagcctagaatgtggcattattgtgtctc 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 465 ggtaattttccttaaaagaggacatgcttcagagcctagaatgtagcattattgtgtctc 406
Query: 483 agcagtaaagctgatgtgtacagtgtgtggcactcatccaaccttgtcaccagtcaatga 542
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 405 agcagtaaagctgatgtgtacagtgtgtggcactcatccaaccttgccaccagtcaatga 346
Query: 543 aattccaggggttgattatactccagcacaaccccacagtgtagagttgctcctttcccc 602
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aatttcaggggttgattatactccagcacaaccccacagtgtagagttgctcctttcccc 286
Query: 603 acgagctaccgtgtctattgtgtcttttgaaatgaaaatgtgtgaattcctgcttactgc 662
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atgagctaccgtgtcaattgtgtcttttgaaatgaaaatgtgtgaattcctgcttactgc 226
Query: 663 tatagaaaggaaatgaccaggg 684
||||||||||||||||||||||
Sbjct: 225 tatagaaaggaaatgaccaggg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_j04.g1 MSMg01no510_j04.g1 CHROMAT_FILE:
MSMg01no510_j04.g1 PHD_FILE: MSMg01no510_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:12 2005
(614 letters)
>mm_chr1_70236283_70237296
Length = 1014
Score = 1079 bits (558), Expect = 0.0
Identities = 604/626 (96%), Gaps = 14/626 (2%)
Strand = Plus / Plus
Query: 1 agtgacacagcacaagaacatg---gcccacagaatcaactgactagaactcatgggaaa 57
||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 187 agtgacacagcacgagaacatgcttccccacagaatcaactgactaggactcatgggaaa 246
Query: 58 acttgagggatcagagaacctgaggaagtctgacctaggttgtctacacatatgttatgg 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcttgagggatcagagaacctgaagaagtctgacctaggttgtctacacatatgttatgg 306
Query: 118 ctgaatatcttggtgttcttatggcaatcctaacagtgggagtgggggctgtctgtgact 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctgaatatcttggtgttcttatggcaatcctaacagtgggagtgggggctgtctgtgact 366
Query: 178 ctttgcttacttggggatgcttttcctcttactgggttgctttatctagccttgatgtga 237
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 367 ctttgcttacttggggatgcttttcctcttactgggttgccttatctagccttgatgtga 426
Query: 238 tggtatgccttactgtagcttcttttttattaataattttatttgtttacatttcaaatg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tggtatgccttactgtagcttcttttttattaataattttatttgtttacatttcaaatg 486
Query: 298 atatcccctttcctggtttcccctccacaaactccccatcccatccca----a------c 347
|||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 487 atatcccctttcctggtttcccctccacaaactccccatcccatcccatcccatcccatc 546
Query: 348 ccatcacccatctcccttataccctttgcctctatgagggtgcttcttgccattttttgt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ccatcacccatctcccttataccctttgcctctatgagggtgcttcttgccattttttgt 606
Query: 408 ttgatgtccccaagaggcctgctattttctgagagtaggcatggggaggggaagacctgg 467
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttgatgtccccgagaggcctgctattttctgagagtaggcatggggaggggaagacctgg 666
Query: 468 gg-agaaggaagaggaggaaaggccagggaggaggaaagtaatatatacaccaggagagg 526
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggcagaaggaagaggaggaaaggccagggaggaggaaagtaatatatacaccaggagagg 726
Query: 527 agaaaaggaaaccaccatgagggtaaaagaagaatgtgcaggaggagaagggaagaggct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agaaaaggaaaccaccatgagggtaaaagaagaatgtgcaggaggagaagggaagaggct 786
Query: 587 ataggataagagagaggagagcatgg 612
|||||||||||||||||||||||||
Sbjct: 787 gtaggataagagagaggagagcatgg 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
