BAC Information

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BAC

Clone NameMSMg01-510O17
Chromosome1 (Build37)
Map Location 66,820,393 - 66,820,679
singlet/doubletsinglet
Overlap gene1110028C15Rik
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe
Downstream geneAcadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510O17.T7 (MSMg01no510_o17.b1)MSMg01-510O17.TJ (MSMg01no510_o17.g1)
ACCAG584241AG584242
length932751
length of high quality
(start - end)
---289 (367 - 655)
definitionCHROMAT_FILE: MSMg01no510_o17.b1 PHD_FILE: MSMg01no510_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:37 2005CHROMAT_FILE: MSMg01no510_o17.g1 PHD_FILE: MSMg01no510_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTAAATATTGCGGGCGGCGGGANGACACAACACTCTTCCCAAAACCCGG
CGGAAATCCCAGACTTTTTCCCAAAGGAACAAAATTCTATCACTATATTA
ATCTATCCCAACTTACCATACCCTTACGATTCTGTATTTGGACTCCTTTA
TCATTACACTCTTTTTCCAAACCTGCTCCTCTATCTCACACCAAATATAA
TTACCATCAGACAACTTTGAGCCCATAAATTTGTTCCGTGTTTGTTCTCC
ACGCTATTCACGGTAATTCCTATTACCACCTCTGTGTTAACCTAGTAGTG
ACATACTGGAATACCTCTTACCATCTTCTTTTACACATTCTTCTCGCATT
TGCCCCTTTCATTATCTCTCGCACCCGACTGTTGTTTTTCTCCATTCCAC
CCTGTTTGCCTACTCTTCCCTTTCTCTTTTCACCACTCACACACCATATC
CCGAATATTCCACCCACTTACTCGCCCTATTTATATATTATCCGACCCTA
CCCTCTCACTATATCCCTTCTATCGCACCCATATATAAACCCCTAATACC
CCTCCCATACTGATCCTATCACTAGACACCCAACCCATCGATAATCCCCC
ATCTTTTACCCCCCCTCGAAAACCCGCAACAAAACCAGCATCGCATGCCG
ATATACCAAATAACTGGTTAATATATCACATCTACAAAGGAACATATTCC
CATTCACAACCCCCATCCCCCCTCTTACGCAACGAAACTCCCCCACCCGC
CAAGTCGCCCACACGTGACCTCACCCGAAACACCCTCCCCTCCTCTATAC
TTTCACCAACACCCTCTTTTCACACACAATATTTTCTCAAATTCCCACAC
TACCCCCAACTATTCTCCCAAATACTCCACCGCATCACCATTTTTCCCCT
CACACTCTCCAATATTATCCCCCCACACACCG
CGATGAAGTGGGTAGGTTGGNGGNCGTCCGGCCTANCCTATTTGCNGAAN
NANAGAAGGATTGCAATCACCAGCGGAAGNGNNNAANGAAACTGCTTGGT
TTGAAAACTGTATTTGTTTTTTCAAAATGTCTTTTGGAAGCTGACATTCT
TCTAAGATCACTATCCCCTAGGGGGTAAAAAACAGTAAAGTGATCACATC
CTACTATCCTCATAGGAAACATAAGATGAAGAATTGAAAATATAGTTTAT
ATTTCTAAAACAGCTGGCTGATTAGGCTGGGAGAGATGGCTCAGCAATAA
AAGTATGCACTATTTATTTTTTCTTTGGAACTAGNNNGCTCCCAGCACCT
GGCGGNCAGTCTCCAGCCATGGGCAGTCTCCAACTCCACACCTCCAGCTC
CAGGGCATCCAACCGACTGTTATGGCCTCTGTGTGTGGTATGCACACGCA
CACACACACATGGAGAAATTTCAAAACAGTATATTTTATGCCCTGTGTGA
TTATACCTCTAAGGAAAGATAGTAGACTAGAAACTGCCTCTATGTGTCTA
TGCCATAGTTACAGAAAAGTGCCAAGATTTTAAAAAAATAAATGTAAGTA
AGTAAATAAATAAAAGGCCTTAATCCAAAGAGAAAAGAGGGAAAAGAGCT
TTGTTTATCCACCAAAAAAGTGATAGAGCATCTGAAAATAACAGCAGAGA
AACAAGTGATAGACTGACAAAAAGGAAGACGAGCCACACACAGTTTCTCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_o17.g1 MSMg01no510_o17.g1 CHROMAT_FILE:
MSMg01no510_o17.g1 PHD_FILE: MSMg01no510_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:37 2005
         (289 letters)



>mm_chr1_66820193_66820881
          Length = 689

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgggcagtctccaactccacacctccagctccagggcatccaaccgactgttatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatgggcagtctccaactccacacctccagctccagggcatccaaccgactgttatggc 260

                                                                       
Query: 61  ctctgtgtgtggtatgcacacgcacacacacacatggagaaatttcaaaacagtatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgtgtgtggtatgcacacgcacacacacacatggagaaatttcaaaacagtatattt 320

                                                                       
Query: 121 tatgccctgtgtgattatacctctaaggaaagatagtagactagaaactgcctctatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgccctgtgtgattatacctctaaggaaagatagtagactagaaactgcctctatgtg 380

                                                                       
Query: 181 tctatgccatagttacagaaaagtgccaagattttaaaaaaataaatgtaagtaagtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctatgccatagttacagaaaagtgccaagattttaaaaaaataaatgtaagtaagtaaa 440

                                                          
Query: 241 taaataaaaggccttaatccaaagagaaaagagggaaaagagctttg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaataaaaggccttaatccaaagagaaaagagggaaaagagctttg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)