BAC Information

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BAC

Clone NameMSMg01-511C12
Chromosome1 (Build37)
Map Location 45,077,822 - 45,205,642
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
Downstream geneLOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511C12.T7 (MSMg01no511_c12.b1)MSMg01-511C12.TJ (MSMg01no511_c12.g1)
ACCAG584419AG584420
length717736
length of high quality
(start - end)
400 (76 - 475)571 (73 - 643)
definitionCHROMAT_FILE: MSMg01no511_c12.b1 PHD_FILE: MSMg01no511_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:56 2005CHROMAT_FILE: MSMg01no511_c12.g1 PHD_FILE: MSMg01no511_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,077,822 - 45,078,219)(45,205,072 - 45,205,642)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGGAGGGGCGGA
ATTCTATACTGATCTCAAGCACAGGTACTTATGTGTTTTATTAAACAAGT
TCTCAGGTATCCCTAACAGTAATCTTATGTCCCCAATTTTCCACACAAAA
GTATCTATGAATCTAGATCTACTTACATATAATATTAAAAGAAGAATTAT
ATCTTTATCTAAAGGAAGAATGAAATTAACTAATAAATGAGGATGAATAA
ACCTGTTGAGGTTTAGAGATTTTCAAATAGATGATTTCCTGAAATTCTAG
ACTTTTCCCCTCTCTGTTTTATAATTTCCCTTTTCTCTAGCAACTACATG
GTGTAGTATATCTTTCTGTTCAGACTCACTTTTGCCCTTGGGCTCATTTT
CATTTCTCTTCTCCTTAGGGAGGGAAGCTGGGCGTGGGAGCTCATGCTCC
ACTGTTAGCTTCTAGTCAACGTGTTATGGGAACCTGCTTGTGAATCTGTT
CCTCATCTGATTGTCTATGAGAACAATCGCTCTTTGATTAGAACCACCTG
GTTCCCACTAAAGTTATTTAATCCATGTGTTCAACCTGCCTAGAATCCTA
GTGCAAACTGCTCATGTGGACCAGTTGCTGATATCATGTAACCACTATAT
ACCGCGGGATTTGCCTAACACTAGCCCTCAACAATGACTCACTAAAAATT
TTTTGTGCTGATATTAC
TTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTAGAATTTGGCATTGTGGAGATAAA
AAATAATATGTTATATATAAAATGAAAATCTCAGACTCAAAACTTACATT
CAAGAATTTCAGAAGTGCAGTGGTTTTAGAATTTTTTCATTTGATCCCTT
TATTTCAGAGCTGAGGAAACGAACACCCAGACAAATAAAATAATTTGCCT
AGTATCAAATAAATTAGTGAAATCTCTGTCTCCTGAGTTTTTCTTTTATA
GTTTTATTGATGACCCTGATAGAAAATATTATAGGATTGATGTAAAAGAA
TAACTTTTAAAAAGCATATAAACAACAAATTGAAGAAACTTAGTCGAAAA
GAATTAGATTAACAGGGAGATGAAGAAAAGCATGCTAAAGAAAGGGAGGA
GGAAGGAATTGCAGAATATGGAGGATATTGAGAGACAGTTTAGTTAAACA
AAACTGAGTGCTTATATTAAAAAGTATGTGGAAACTCACTACGTTGTAAC
CTAATTAAAAAATATTTTGTTTAAAAAAATAAATGAGTGAAAAACGCATC
TCCTAGAAGACATGAATTTGCTAAATAAAAGTTTAATTGTAAGTATGGAG
TACCTCCTTTTGAGTTGTTGGTCAGGGAGGCTCTGGATGCCTTTCTTACA
ACACATAGTATGGCCACCGTTTTGGTTACTGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_c12.b1 MSMg01no511_c12.b1 CHROMAT_FILE:
MSMg01no511_c12.b1 PHD_FILE: MSMg01no511_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:56 2005
         (400 letters)



>mm_chr1_45077622_45078421
          Length = 800

 Score =  700 bits (362), Expect = 0.0
 Identities = 389/398 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacttatgtgttttattaaacaagttctcaggtatccctaacagtaatcttatgtcccca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tacttatgtgttttattaaacaagttctcaggtatccctaacagcaatcttatgtcccca 260

                                                                       
Query: 61  attttccacacaaaagtatctatgaatctagatctacttacatataatattaaaagaaga 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 attttccacacaaaagtatctatgaatctagatcaacttacatataatattaaaagaaga 320

                                                                       
Query: 121 attatatctttatctaaaggaagaatgaaattaactaataaatgaggatgaataaacctg 180
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 321 attatatctttatctaaaggaagaatgaaataaactaataaatgaggatgaataaatctg 380

                                                                       
Query: 181 ttgaggtttagagattttcaaatagatgatttcctgaaattctagacttttcccctctct 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 381 ttgaggtttagagattttcaaatagatgatttcctgaaattctagatttttcccccctct 440

                                                                       
Query: 241 gttttataatttcccttttctctagcaactacatggtgtagtatatctttctgttcagac 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gttttataatttcccttttctctagcagctacatggtgtagtatatctttctgttcagac 500

                                                                       
Query: 301 tcacttttgcccttgggctcattttcatttctcttctccttagggagggaagctgggcgt 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 tcacttttgcccttgggctcattttcatttctcttttccttagggagggaagctgggcgt 560

                                                 
Query: 361 gggagctcatgctccactgttagcttctagtcaacgtg 398
           ||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 gggagctcaggctccactgttagcttctagtcaacgtg 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no511_c12.g1 MSMg01no511_c12.g1 CHROMAT_FILE:
MSMg01no511_c12.g1 PHD_FILE: MSMg01no511_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:56 2005
         (571 letters)



>mm_chr1_45204767_45205737
          Length = 971

 Score = 1096 bits (567), Expect = 0.0
 Identities = 570/571 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttagaatttggcattgtggagataaaaaataatatgttatatataaaatgaaaatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 atttagaatttggcattgtggagataaaaaataatatgttatatataaaatgaaaatctc 817

                                                                       
Query: 61  agactcaaaacttacattcaagaatttcagaagtgcagtggttttagaattttttcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 agactcaaaacttacattcaagaatttcagaagtgcagtggttttagaattttttcattt 757

                                                                       
Query: 121 gatccctttatttcagagctgaggaaacgaacacccagacaaataaaataatttgcctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gatccctttatttcagagctgaggaaacgaacacccagacaaataaaataatttgcctag 697

                                                                       
Query: 181 tatcaaataaattagtgaaatctctgtctcctgagtttttcttttatagttttattgatg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tatcaaataaattattgaaatctctgtctcctgagtttttcttttatagttttattgatg 637

                                                                       
Query: 241 accctgatagaaaatattataggattgatgtaaaagaataacttttaaaaagcatataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 accctgatagaaaatattataggattgatgtaaaagaataacttttaaaaagcatataaa 577

                                                                       
Query: 301 caacaaattgaagaaacttagtcgaaaagaattagattaacagggagatgaagaaaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 caacaaattgaagaaacttagtcgaaaagaattagattaacagggagatgaagaaaagca 517

                                                                       
Query: 361 tgctaaagaaagggaggaggaaggaattgcagaatatggaggatattgagagacagttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgctaaagaaagggaggaggaaggaattgcagaatatggaggatattgagagacagttta 457

                                                                       
Query: 421 gttaaacaaaactgagtgcttatattaaaaagtatgtggaaactcactacgttgtaacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gttaaacaaaactgagtgcttatattaaaaagtatgtggaaactcactacgttgtaacct 397

                                                                       
Query: 481 aattaaaaaatattttgtttaaaaaaataaatgagtgaaaaacgcatctcctagaagaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aattaaaaaatattttgtttaaaaaaataaatgagtgaaaaacgcatctcctagaagaca 337

                                          
Query: 541 tgaatttgctaaataaaagtttaattgtaag 571
           |||||||||||||||||||||||||||||||
Sbjct: 336 tgaatttgctaaataaaagtttaattgtaag 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)