CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTTCTCACTGCAAACAGAACAGCTTCTTAACTTGTAACATGTC
ACATGCCTCAGTCACATTTGAGCATTGTCAGGATGGGACGTTCGTAATAA
AGCCACAGATTCACTCAATTTTCTAAAACAAACATTTGAAAGCATGTTTA
GATCAGAGAATCAGATGTGAATTCTTTTCAACAATTGGCATGTACTTCCT
ACTCCCATAACAACAACAGTGACAATTCTGTCTGAATGAAATAGAACTAG
CCAGTCATTTAAAATGAAGCCCAATGGGCTGAGGAGATGGCTCAGCTGTT
AAGGGCATTTGCTACTCTTTGGTAGGAGTCTAGTTCAGTTCCCAGAACCT
ATGTCAGAAGAGTCTGCACCTCTAGCTCCACGGCATCATCTAGCCTGTGC
AGGCACTGGCACGTATACCCACATGGATGCGGGGCAGTGGGCATGGGGAA
TAAAGGTGGCTGTGGGAAGCCACTGAATCCAGCCTGCCAGGGGGAGGCCA
GAGATAACAGGTTCTCAGTCTCAAGCATCTCAGACGCTGCTGGACACCGC
GGAAGAGCTGAGAACAAAGTAGGGGCCCCAAGGGTGGCTCGGTCATCCCA
GAGCCTAANGGAGGAGAGGGCAGGGGGAGAGGGAGCTCTGGGTGGTTCCC
ACAAGGGCGGGAGTCTTTGGTCCTGTCTGTGGCTGGAGCACAGGAAGGCC
TTCTG

TCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACCAAATGCATAATGAACCC
AAGATTTTTCTGGAAGTGCTCATCCAGTTGTATCACATGACTTCACTGAA
ATCTTGGTTCTGAGCATTCAACATGCTCACTTTGAACTCCCTACGCATTC
ATGGCATGAAATACCAAAATGCTCCCCACACAACCCTGCGTGGATTGAAG
ACTGCCACAGGTTATGAATAGTAGTCTTTACTATACATGCAATACAAAGT
TCCCTGCTGTTTAGAAACAGAGTGCCTTAAATATGCAAAACAAAAACTTT
AAACATCTCCTATTAGTAGTTCTCAATAATATGTATTACATATTTACATT
GTATTATACTAGAATGTTTGAGTTTTGGAATTTTCTAAATGAGTTGCTGA
TGAGTTTCATTTTCAAAAAATTGTTACATGAACTCTAGCTTATGTTTAAA
ACAGAGTTTTTAAAATAATCCGAAACTTTCCTAAATACACCTCTGCCAGT
TGATACTATATGTTTATGCAAAGTAGGGTTCTTACCAATGAAAATTATAA
AGTCTAACTATCAGGGAATGAGATATTTAGTTCACTAGTAGAGATGAAGT
AGAAGCCTTTATTTTTGACCTCAGCACCAAACAAACAAAAATAAATGTCA
CTGAAATTTGAAAGAATTGAATGCAGATTCCACCTTATAGCACTATTA

Query= MSMg01no511_e19.b1 MSMg01no511_e19.b1 CHROMAT_FILE:
MSMg01no511_e19.b1 PHD_FILE: MSMg01no511_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:07 2005
         (589 letters)



>mm_chr1_6390241_6391232
          Length = 992

 Score = 1067 bits (552), Expect = 0.0
 Identities = 581/592 (98%), Gaps = 3/592 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaacagaacagcttcttaacttgtaacatgtcacatgcctcagtcacatttgagcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaaacagaacagcttcttaacttgtaacatgtcacatgcctcagtcacatttgagcatt 260

                                                                       
Query: 61  gtcaggatgggacgttcgtaataaagccacagattcactcaattttctaaaacaaacatt 120
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gtcaggatgggacgtttgtaataaagccacagattcactcaattttttaaaacaaacatt 320

                                                                       
Query: 121 tgaaagcatgtttagatcagagaatcagatgtgaattcttttcaacaattggcatg---t 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |
Sbjct: 321 tgaaagcatgtttagatcagagaatcagatgtgaattcttttcaacaattgacatgatgt 380

                                                                       
Query: 178 acttcctactcccataacaacaacagtgacaattctgtctgaatgaaatagaactagcca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttcctactcccataacaacaacagtgacaattctgtctgaatgaaatagaactagcca 440

                                                                       
Query: 238 gtcatttaaaatgaagcccaatgggctgaggagatggctcagctgttaagggcatttgct 297
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcatttaaaatgaagcccagtgggctgaggagatggctcagctgttaagggcatttgct 500

                                                                       
Query: 298 actctttggtaggagtctagttcagttcccagaacctatgtcagaagagtctgcacctct 357
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcttcggtaggagtctagttcagttcccagaacctatgtcagaagagtctgcacctct 560

                                                                       
Query: 358 agctccacggcatcatctagcctgtgcaggcactggcacgtatacccacatggatgcggg 417
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 agctccacggcatcatctagcctgtgcaggcactggcacgtatacctacatggatgcggg 620

                                                                       
Query: 418 gcagtgggcatggggaataaaggtggctgtgggaagccactgaatccagcctgccagggg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagtgggcatggggaataaaggtggctgtgggaagccactgaatccagcctgccagggg 680

                                                                       
Query: 478 gaggccagagataacaggttctcagtctcaagcatctcagacgctgctggacaccgcgga 537
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 aaggccagagataacaggttctcagtctcaggcatctcagacgctgctggacaccgcgga 740

                                                               
Query: 538 agagctgagaacaaagtaggggccccaagggtggctcggtcatcccagagcc 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agagctgagaacaaagtaggggccccaagggtggctcggtcatcccagagcc 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 992
Length adjustment: 10
Effective length of query: 579
Effective length of database: 982
Effective search space:   568578
Effective search space used:   568578
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)