BAC Information

Click to search

BAC

Clone NameMSMg01-511G12
Chromosome1 (Build37)
Map Location 191,264,682 - 191,265,166
singlet/doubletsinglet
Overlap genenone
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307
Downstream geneCenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511G12.T7 (MSMg01no511_g12.b1)MSMg01-511G12.TJ (MSMg01no511_g12.g1)
ACCAG584609AG584610
length721741
length of high quality
(start - end)
84 (346 - 429)495 (73 - 567)
definitionCHROMAT_FILE: MSMg01no511_g12.b1 PHD_FILE: MSMg01no511_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:16 2005CHROMAT_FILE: MSMg01no511_g12.g1 PHD_FILE: MSMg01no511_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATTTGTGGCCGCTAATCGACTCATTTTTTCTGAGAGGATCCGCGGA
ATTCAGACTTTCCCAGCAGAGTGTATGAGGCACATGGAGCTTACCCTGAA
GCAAAAGGAGAGTGTAGCATGGTCAGAGGGACCTCTGTGCTGACCTATGT
ATCTTTAAAGTTTCCGGATCATACAGCTTTTGAGGGTGTGTTTTGTCATC
CGGTTGACCGACAGGCCTGTTGGATTCACAGATAATCATTGACTCCCAAG
GGAGATACGGTGTACATCTCTGTCCCTTCCTGGACATTTCCTGTGGATGG
CAATCATACAGTCTGTGTGTGATGTCTCTACCCAGATTCACAGACACAAC
TCAGATCTCATTCTTTGGGCCATGAATCTGGGCCCTGTCAGCTCAGTTCC
TGGTTTCCCAGGCTATTGATCATTGCCGTGACGTCTACTGTGACGTCCTG
TTCACACCTGATGAGCTACAGAGCATTATAATCTCTGCGTCTTGGCTGGT
CCTTGACTTATGCAAACTATGTAGACCGCCTGACTTATTTGGTGGTAGCA
AAGCAGATATTCTTTTGTAGACACATTGGTGGACATTGATAGTCCTATCA
ACTGACACCGACGATTGACGATTATGACTTTTAGAACCATTTCGCCTATC
TATACAGATTTTGATTCCAAAATTCTTACCACGAGTGGGTGACTGAATAA
TTTATTTTTACATTTTTTATC
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATATGAAAATAGACAAAGGGCTGGTGAG
ACGGCTCAGTCAGGAAGCACTTGATGATGACCTGGGTTTATAGCAACAGC
GCCCATGCAAGAGACAGCAAGTGACTCATTCCTCTAATCCCAGCCCCGGG
GAGATGGAGGCCGAGGCTCTCCAGAGCTTGCTAGCCTCTCAGCCGAGCTG
AGTCAATGAGCTCCAGGTTCAGTGAGAGACCCTGTCTCAGATATAAGGTG
GAGCGTCATACAGGAATACACCTGACATGGACCTCTGGCCCCTCATACTC
ACACAATCAAACTGTAGTGTGGCTAACGTGTAGTCCTACTGACGCAGGCA
CTCACTAGCACAGCAAACATTCCATACTGATACTAAAGCACATGGCTGCA
TATGCTAGCAAAACTTTCATGAAACTTTTGCTGTAGCTCTGAGCATCCTA
GCATTGAAGTCCTGCGTGAGAGCTATAACAGAACAAAGAGTGGCCTCCTC
CCCTTCCTCCTCCTCCTCCTCCTCCACTATATTCTCCTTCTCCTCCCTTT
CCTCTTCTTTCTTCTCCTCCTTTCTTCCCTTCTTTCTCTCTCCTCTCTCT
TTCTTTCCCAACCCTTTTATGTTGCTGCTATCATTAATATTCGCTGCCAA
CTTATACCGTGTTAGCTTCCCTATATCAGTTTTTTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_g12.g1 MSMg01no511_g12.g1 CHROMAT_FILE:
MSMg01no511_g12.g1 PHD_FILE: MSMg01no511_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:16 2005
         (495 letters)



>mm_chr1_191264482_191265376
          Length = 895

 Score =  884 bits (457), Expect = 0.0
 Identities = 478/485 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgaaaatagacaaagggctggtgagacggctcagtcaggaagcacttgatgatgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgaaaatagacaaagggctggtgagacggctcagtcaggaagcacttgatgatgacc 260

                                                                       
Query: 61  tgggtttatagcaacagcgcccatgcaagagacagcaagtgactcattcctctaatccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tgggtttatagcaacagcgcccatgcaagagacagcaagtgactcattcctctaatcccg 320

                                                                       
Query: 121 gccccggggagatggaggccgaggctctccagagcttgctagcctctcagccgagctgag 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccccggggagatagaggccgaggctctccagagcttgctagcctctcagccgagctgag 380

                                                                       
Query: 181 tcaatgagctccaggttcagtgagagaccctgtctcagatataaggtggagcgtcataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatgagctccaggttcagtgagagaccctgtctcagatataaggtggagcgtcataca 440

                                                                       
Query: 241 ggaatacacctgacatggacctctggcccctcatactcacacaatcaaactgtagtgtgg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagacacctgacatggacctctggcccctcatactcacacaatcaaactgtagtgtgg 500

                                                                       
Query: 301 ctaacgtgtagtcctactgacgcaggcactcactagcacagcaaacattccatactgata 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 501 ctaacgtgtagtcctactgacgcaggcactcactagcacagcaagcattccataccgata 560

                                                                       
Query: 361 ctaaagcacatggctgcatatgctagcaaaactttcatgaaacttttgctgtagctctga 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 ctaaagcacatggctgcatatgctagcaaaacttttatgaaacttttgctgtagctctga 620

                                                                       
Query: 421 gcatcctagcattgaagtcctgcgtgagagctataacagaacaaagagtggcctcctccc 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatcctagcattgaagtcctgtgtgagagctataacagaacaaagagtggcctcctccc 680

                
Query: 481 cttcc 485
           |||||
Sbjct: 681 cttcc 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)