BAC Information

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BAC

Clone NameMSMg01-511L07
Chromosome1 (Build37)
Map Location 192,853,045 - 192,853,510
singlet/doubletsinglet
Overlap genenone
Upstream geneProx1, LOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik
Downstream gene1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511L07.T7 (MSMg01no511_l07.b1)MSMg01-511L07.TJ (MSMg01no511_l07.g1)
ACCAG584838AG584839
length719733
length of high quality
(start - end)
467 (66 - 532)509 (75 - 583)
definitionCHROMAT_FILE: MSMg01no511_l07.b1 PHD_FILE: MSMg01no511_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:38 2005CHROMAT_FILE: MSMg01no511_l07.g1 PHD_FILE: MSMg01no511_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAGGATCCGCGGAA
TTCAGGAATCTTATCCACAAGATCCCTGTCAGACCAGTTTGTTAATCTTG
TCGGGGATGACGGCAGCAACCATGTAGCTGTCCAAGTAAGGAAATCGGTG
TCCTATCCAACTGTTGACTGCCTCTGGTGAAAGAAAGGTATCCTTGCTAT
GCAAGGAGCTTGTTACAGAAGTCCATAGGTGCTTCTCTTCAGGAGTATAC
TGAAGACACCCTTTATGTATGGGCTCTGCCATTGTAAGTTCAGATTGAAA
GTACTTGGTGTGAACAATTGTGTGACAATCCAAGCAGGCTTAGGCCTAAA
TTAATAAAAAAAAGAATGAGACAGGAGAAACACTAAGTAAGATGTGAGCA
GATAACAAGGTGATAACATGTACTGAATATTATTAATACAGGAAGAGGTC
AGACCCTCCTAGAATGTGTGCTAGCTACTTACTTTTTATTTCTCACAACA
ATGTCTGCACTATCCTCATCTTATAGCTACATACACATACGTGCACACAC
ACACACACACACACACTCTCTCACCCGAGGGGGGGTATGCAAGACCTTGG
ATCTGAACCCTTATCTTTGTAGCTTTTTATTTACCACCCCACACTAGATT
ACTAAACCAACTGAGAAAGCCTACCACGTACCAAGCATTGTTCAATCCTT
TTATCATTACCGCACTCCT
CATTCTATTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGCTCCTCCTGCACCATGCCTGCC
TGGAAACTACCATGTTCCCACCTTGACAATAACAGACTAAACCTCTGAAC
CTGCAAGCCAGCCCCTATTAAAAGCTGTCCTTATAAGAGTGGCCTAGGTC
ATGGTGTCTGCAGCAAAACCCTAAGACAGAAGTTGGTAATGGCGTAGGGT
ATTGCTGTGATAGGCCTGACCATGCTTTTGTTTGGAGGAATGTGGATTTT
GGGACTTTAGAAAGCAGTGGAGTGTTTTAAGTGGGGCTTAATGGGCTATC
CTGGTAGGAATATGGAAGACTTTGTTGCTAAGCATGATTTGAACTGTAGA
AGCCTGGCTATAGAGGTTTCAGAGGAAAAGAATTCTAGTATGGGTCAGAG
AGATGATTGTGATGTTTTGGTAAAGAATGTTGCTGCTTTTGCCCTTGTCT
GAAGAGTCTGCCTGAGGCTAATGTGAAAAGAGTTAAATTAATTGCATTGA
CAAAGCAACCCAGCTTAGACTCTGTGCTGTGGTTTATTCTCACGAAGAGT
GTTTCGATAAAGCATAGCAAGCTTAAAAATTAATAATGCAAACTATATAG
TTCATATGTTATAGGGGTGCCAGGAGCTGAACCCTATGTTCTAGGAGATA
AACAGACTAAAGGAGTGTTGATTTCTAAGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_l07.b1 MSMg01no511_l07.b1 CHROMAT_FILE:
MSMg01no511_l07.b1 PHD_FILE: MSMg01no511_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:38 2005
         (467 letters)



>mm_chr1_192852845_192853711
          Length = 867

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaagatccctgtcagaccagtttgttaatcttgtcggggatgacggcagcaaccatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cacaagatccctgtcagaccagtttgttaatcttgtcggggatgacggcagcaaccatgt 607

                                                                       
Query: 61  agctgtccaagtaaggaaatcggtgtcctatccaactgttgactgcctctggtgaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agctgtccaagtaaggaaatcggtgtcctatccaactgttgactgcctctggtgaaagaa 547

                                                                       
Query: 121 aggtatccttgctatgcaaggagcttgttacagaagtccataggtgcttctcttcaggag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 546 aggtatccttgctatgcaaggagcttgttacagaagtccgtaggtgcttctcttcaggag 487

                                                                       
Query: 181 tatactgaagacaccctttatgtatgggctctgccattgtaagttcagattgaaagtact 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tatactgaagacaccctttaggtatgggctctgccattgtaagttcagattgaaagtact 427

                                                                       
Query: 241 tggtgtgaacaattgtgtgacaatccaagcaggcttaggcctaaattaataaaaaaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tggtgtgaacaattgtgtgacaatccaagcaggcttaggcctaaattaataaaaaaaaga 367

                                                                       
Query: 301 atgagacaggagaaacactaagtaagatgtgagcagataacaaggtgataacatgtactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 366 atgagacaggagaaacactaagtaagatgtgagcagataacaaggtgataacatgtactt 307

                                                                       
Query: 361 aatattattaatacaggaagaggtcagaccctcctagaatgtgtgctagctacttacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatattattaatacaggaagaggtcagaccctcctagaatgtgtgctagctacttacttt 247

                                                         
Query: 421 ttatttctcacaacaatgtctgcactatcctcatcttatagctaca 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttatttctcacaacaatgtctgcactatcctcatcttatagctaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)