BAC Information

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BAC

Clone NameMSMg01-511M04
Chromosome1 (Build37)
Map Location 52,049,105 - 52,049,451
singlet/doubletsinglet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014
Downstream geneStat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511M04.T7 (MSMg01no511_m04.b1)MSMg01-511M04.TJ (MSMg01no511_m04.g1)
ACCAG584880AG584881
length722726
length of high quality
(start - end)
181 (45 - 225)347 (76 - 422)
definitionCHROMAT_FILE: MSMg01no511_m04.b1 PHD_FILE: MSMg01no511_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:43 2005CHROMAT_FILE: MSMg01no511_m04.g1 PHD_FILE: MSMg01no511_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTACTTACATATCAGCATCCCATAAGAACCCTTTGTCTTGCTTC
CCTTCTAGGCTCTACAGATTCATAGGCATTTGCGGTGGTTCAACTGGGAA
GCCCAGATCTATCTGAACTATCATCTTAGATGCTTCTCCATCCACAATCC
TGTGCGAGTGGACCCCCACCCCTATCTCTACCTCCTCCCCCACCCTTCGC
TCACACTGCTTTAAAGTTTCTTTACACCCTTATGTTGATTTAAACTTCTC
CCATTTGCTTTTTCCTAACTCTGTATGGAAACCTCTTTGTTATACCCCTG
TGTTTATGATTTACCTTCTACTAGTAAGCTATGGTAGATATTCCTTATGA
TGTCTTGTGTGACCTAATTCTCCTAAGATAAACCCCCCTTTAACCTATTA
TATATACTCCCATTCTCTCGCACAATTCTGATCCCTTATTTCCCACGTCT
AAACCCACTTTACGACTGTTTTTTTCCCCCCTTCTTATTGCCCCTTCCCC
CTCTCTGAATTTTTTTGGCGTAATTCTCTCTCCCATTTTTTATCTTTTGT
TTCTTCCCCTCCCCTTATTTTTCCTCTGTTTTCTACACCTCCCCCGTTCT
GTTCCTCATTTTCTTCCCCCCCTTTTTCCCTTCTTTCTTTACCCGTAACT
TTTTTTTATTCTCCTATTTAAC
CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGACACCATCAAAGCAAAAGACTC
TGAGGGAGTTCTCAGTGTTCCGGCTGACAGGGAACCCTTTCTTTCCCTGG
AATCCTCTTGAGGGGGACAGGCTTTGGGCAGAGTGGCCGTCAGCACATTC
CCAGCTGGAATGACCTTCTATTCTTGTCCAGTGAAGCTGACCTCTGTTCC
CCAGAATGCTCTCCGTGTTCATCTCAGGAAAGAACTTCAAGTGCACACTT
ACACAGTTTCTAGATGACAAGCACACCCCTCTCCAGATGGCAAACATTAT
ATGCATCTCTGAAATCTCACCTTAGGAGAGATCGCGTGCTGGCTTACAAG
AATGGAGACTGGAAAAAGTTGGCTTGCAGCCGATTTTTGAATCCCACATT
ATGCTATGCCCAGTCTAGCTTTCCTCCCTTGGACTGGCAGCAATCCATCC
TACCCACTTCAATCTGCTATCATCAAGTGGCAATCACAACCAACCCGAAA
ATACTTACTATGTAATTCTAGACTTTTCATCATTTTTCAGCCAACAGAAT
CACTCAAGTTTCAGGAGCTCTCGAGGACTCGTCTAGTACATCCTGCTTAC
CCACATGATGTTGCCCAGCTCATTCCTCCATCCATGCTACGGGGACCCCG
GTTTCCCCCCTTGGACAAAATGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_m04.g1 MSMg01no511_m04.g1 CHROMAT_FILE:
MSMg01no511_m04.g1 PHD_FILE: MSMg01no511_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:43 2005
         (347 letters)



>mm_chr1_52048905_52049651
          Length = 747

 Score =  656 bits (339), Expect = 0.0
 Identities = 345/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagacaccatcaaagcaaaagactctgagggagttctcagtgttccggctgacagggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tagacaccatcaaagcaaaagactctgagggagttctcagtgttccggctgacagggaac 488

                                                                       
Query: 61  cctttctttccctggaatcctcttgagggggacaggctttgggcagagtggccgtcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cctttctttccctggaatcctcttgagggggacaggctttgggcagagtggccgtcagca 428

                                                                       
Query: 121 cattcccagctggaatgaccttctattcttgtccagtgaagctgacctctgttccccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cattcccagctggaatgaccttctattcttgtccagtgaagctgacctctgttccccaga 368

                                                                       
Query: 181 atgctctccgtgttcatctcaggaaagaacttcaagtgcacacttacacagtttctagat 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atgctctctgtgttcatctcaggaaagaacttcaagtgcacacttacacagtttctagat 308

                                                                       
Query: 241 gacaagcacacccctctccagatggcaaacattatatgcatctctgaaatctcaccttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gacaagcacacccctctccagatggcaaacattatatgcatctctgaaatctcaccttag 248

                                                          
Query: 301 gagagatcgcgtgctggcttacaagaatggagactggaaaaagttgg 347
           |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gagagaccgcgtgctggcttacaagaatggagactggaaaaagttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)