BAC Information

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BAC

Clone NameMSMg01-512I23
Chromosome1 (Build37)
Map Location 42,215,464 - 42,401,505
singlet/doubletdoublet
Overlap geneLOC666582
Upstream geneLOC100041441, LOC383634
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512I23.T7 (MSMg01no512_i23.b1)MSMg01-512I23.TJ (MSMg01no512_i23.g1)
ACCAG585491AG585492
length752771
length of high quality
(start - end)		579 (36 - 614)486 (69 - 554)
definitionCHROMAT_FILE: MSMg01no512_i23.b1 PHD_FILE: MSMg01no512_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:45 2005CHROMAT_FILE: MSMg01no512_i23.g1 PHD_FILE: MSMg01no512_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,215,464 - 42,216,038)(42,401,024 - 42,401,505)
sequence
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAA
AATCCAAAGCAGCCACGACCGTGAGAGAATATGGTGAAACAAAGGGTCAA
CTGAAACAGCGTTCTGTTATCAGAGCAATAAAGCGGCTTCTAGAGCATCT
GTCCCCAGGCATCCCTGGGCCAAGGATAACCAAATAAATAAATGAGGAGA
AGGGAACCTACTTTGTAGAAAATTAACTTTTTGAGAGGCTTACTCTATAG
TTCAAGTGATGTTAACTAACACAAAATTCTTTCTCCATTCACCTCCTATG
AACTGGGAATACAGGCATGTTCTCAGGCCAAGATCAATAGATGAGGACTC
TTCATCCTTCAAACAATAGAGCCTAAGTTCCTGTAGGTGGCAAATTCTTC
CCAAAGAATACTCTGTCAACATGAGGAAGGAAGGCATCCAGCATTCTCAG
GAACCTGACAAAGGCTTCAGCCAGGCATTGAGGTCAGCATTAACAGGGAA
GGGTGATAGTGGTCAATTGTGTCCTTGATATAATTTGCTGACAATGAAGC
AGCTTCTATGTTCTTCATAGAACCAATCTCCACTCTGCTCATAAAGGGAA
AATTCATGTGCTCAAGGAGACATTAAGTCTTAGTGGAATGTGGCAGACGG
AAAAGGACCATAGATGCTAAGAAGAGAGACCATTCTCAAGAGTGAGCAAC
ATTATTGAAAGGGCATATTAATTTCATTACTGGAACTGATGTTCTTTTCT
AA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGTTGGAACATTCAAACTGCTGCAGACAACA
CCACGTTTCTGTGATGACTACAGGCAACTCTCTCACCCCTAGATTCAACC
AATGAAAACAGAATATTCAAGAGCATGAAATATTCGTACCCAATACAGTC
ATTAATCACTAAATGTTACAGTAGATCAAAGTGTTGATTGATATAACATT
TACTTTGTGTTATATAGCACAAGGGATGGATAAAAATTTAAGCTATGGAG
AAGGACATACATGGGGTACAGGGAAATGCTCTGCCACTTATTGAAGGCAC
TGGAAGGCTGACCGTACCAGAGTAAGCAGTCTTATTGATTTTCAATATTG
CTAATGTGGTGATTTGAATATGCTTGACCCAGGGAGTGGCACTATTAGGA
GGTGTGTGGCCTTGTTGGAGTAGGTGTGTCCAGATGGGCTTGGGCTTTGA
GACCCTCCCTCTAACGGCCTGGAAGCCAATATGCTCCTAGTTTCCTTCGG
ATGAAGATGTAGAACTCTCAGCTCCTCCTGCACCATGACTGTCTGGATGC
TGCCATGCTCCCACCTTGATGATAATGGACTGAACCTCTGAACCTGTGAG
CCAGCCCCAATTAAATGCTGTTTTTATAAGAGTTGCCTCGGTCACAGTGT
CTGTTGACAGCAGTAAACCTTAACTAGACATAACTCTAAGGTTTGTTTCT
GATTTGCTATCACATCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_i23.b1 MSMg01no512_i23.b1 CHROMAT_FILE:
MSMg01no512_i23.b1 PHD_FILE: MSMg01no512_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:45 2005
         (579 letters)



>mm_chr1_42215260_42216238
          Length = 979

 Score = 1050 bits (543), Expect = 0.0
 Identities = 567/575 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaaaatccaaagcagccacgaccgtgagagaatatggtgaaacaaagggtca 64
           |||||||||||||   |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 205 gaattccagaaaaaggaaagcagccacgactgtgagagaatatggagaaacaaagggtca 264

                                                                       
Query: 65  actgaaacagcgttctgttatcagagcaataaagcggcttctagagcatctgtccccagg 124
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 265 actgaaacagcgttctgttatcagagcaataaagtggcttccagagcatctgtccccagg 324

                                                                       
Query: 125 catccctgggccaaggataaccaaataaataaatgaggagaagggaacctactttgtaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catccctgggccaaggataaccaaataaataaatgaggagaagggaacctactttgtaga 384

                                                                       
Query: 185 aaattaactttttgagaggcttactctatagttcaagtgatgttaactaacacaaaattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaattaactttttgagaggcttactctatagttcaagtgatgttaactaacacaaaattc 444

                                                                       
Query: 245 tttctccattcacctcctatgaactgggaatacaggcatgttctcaggccaagatcaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctccattcacctcctatgaactgggaatacaggcatgttctcaggccaagatcaata 504

                                                                       
Query: 305 gatgaggactcttcatccttcaaacaatagagcctaagttcctgtaggtggcaaattctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatgaggactcttcatccttcaaacaatagagcctaagttcctgtaggtggcaaattctt 564

                                                                       
Query: 365 cccaaagaatactctgtcaacatgaggaaggaaggcatccagcattctcaggaacctgac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccaaagaatactctgtcaacatgaggaaggaaggcatccagcattctcaggaacctgac 624

                                                                       
Query: 425 aaaggcttcagccaggcattgaggtcagcattaacagggaagggtgatagtggtcaattg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaggcttcagccaggcattgaggtcagcattaacagggaagggtgatagtggtcaattg 684

                                                                       
Query: 485 tgtccttgatataatttgctgacaatgaagcagcttctatgttcttcatagaaccaatct 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtccttgatatgatttgctgacaatgaagcagcttctatgttcttcatagaaccaatct 744

                                              
Query: 545 ccactctgctcataaagggaaaattcatgtgctca 579
           |||||||||||||||||||||||||||||||||||
Sbjct: 745 ccactctgctcataaagggaaaattcatgtgctca 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_i23.g1 MSMg01no512_i23.g1 CHROMAT_FILE:
MSMg01no512_i23.g1 PHD_FILE: MSMg01no512_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:46 2005
         (486 letters)



>mm_chr1_42400970_42401855
          Length = 886

 Score =  870 bits (450), Expect = 0.0
 Identities = 474/482 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tggaacattcaaactgctgcagacaacaccacgtttctgtgatgactacaggcaactctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tggaacattcaaactgctgcagacaacaccacgtttctgtgatgactacaggcaactctc 477

                                                                       
Query: 65  tcacccctagattcaaccaatgaaaacagaatattcaagagcatgaaatattcgtaccca 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tcacccgtagattcaaccaatgaaaacagaatattcaagagcatgaaatattcgtaccca 417

                                                                       
Query: 125 atacagtcattaatcactaaatgttacagtagatcaaagtgttgattgatataacattta 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atacagtcattaatccctaaatgttacagtagatcaaagtgttgattgatataacattta 357

                                                                       
Query: 185 ctttgtgttatatagcacaagggatggataaaaatttaagctatggagaaggacatacat 244
           |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 356 ctttgtgttatacagtacaagggatggataaaaatttaagctatgaagaaggacatacat 297

                                                                       
Query: 245 ggggtacagggaaatgctctgccacttattgaaggcactggaaggctgaccgtaccagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggggtacagggaaatgctctgccacttattgaaggcactggaaggctgaccgtaccagag 237

                                                                       
Query: 305 taagcagtcttattgattttcaatattgctaatgtggtgatttgaatatgcttgacccag 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 236 taagcagtcttattgattttcaatattgctaatgtggtggtttgaatatgcttgacccag 177

                                                                       
Query: 365 ggagtggcactattaggaggtgtgtggccttgttggagtaggtgtgtccagatgggcttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ggagtggcactattaggaggtgtgtggccttgttggagtaggtgtgtccagatgggcttg 117

                                                                       
Query: 425 ggctttgagaccctccctctaacggcctggaagccaatatgctcctagtttccttcggat 484
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 116 ggctttgagaccctccttctaacggcctggaagccaatatgctcctagcttccttcggat 57

             
Query: 485 ga 486
           ||
Sbjct: 56  ga 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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