Query= MSMg01no513_a22.b1 MSMg01no513_a22.b1 CHROMAT_FILE:
MSMg01no513_a22.b1 PHD_FILE: MSMg01no513_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:26 2005
(715 letters)
>mm_chr1_36991709_36992822
Length = 1114
Score = 1359 bits (703), Expect = 0.0
Identities = 709/711 (99%), Gaps = 1/711 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaccccttggtttggcaagccaaaaagaaatctcaagccacaagggagagcat 64
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaccccttggtttggcaagccaaaaagaaatctcaagccacaagggagagcat 264
Query: 65 ttctaagatactgagaacccagtaaagacaaatttactgtgccgccgagaggaacatgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctaagatactgagaacccagtaaagacaaatttactgtgccgccgagaggaacatgtt 324
Query: 125 ttatcaagagtctgggtaacaaattagatgactttacaactgcctccaaagctcatctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatcaagagtctgggtaacaaattagatgactttacaactgcctccaaagctcatctct 384
Query: 185 tcagaggtgcctatgaggactcactgtaagaatttagggagagatactgaaaggaggaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagaggtgcctatgaggactcactgtaagaatttagggagagatactgaaaggaggaga 444
Query: 245 agatgcttctcagaaaacaaagggcacacttccctactataagggctccgatgtttctga 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 agatgcttctcagaaaacaaagggcacacttccctactata-gggctccgatgtttctga 503
Query: 305 caactaaacagcttttagaaaaagcaaaacaagctcactcatagagtgctcgttctgtac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caactaaacagcttttagaaaaagcaaaacaagctcactcatagagtgctcgttctgtac 563
Query: 365 caccctatttaacaggctctaaattaaaacgtagccattccacccagaggacaaaacacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caccctatttaacaggctctaaattaaaacgtagccattccacccagaggacaaaacacc 623
Query: 425 cactctccttaaaatgtagctttacattagaaagtgcacatctctctaatcgattctatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cactctccttaaaatgtagctttacattagaaagtgcacatctctctaatcgattctatg 683
Query: 485 agcccaagacagacaaatcactaacaggcttttatctcccttcttcgggccttcagtcct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agcccaagacagacaaatcactaacaggcttttatctcccttcttcgggccttcagtcct 743
Query: 545 aagcagtgggttcttatgctttgcatagagaataccattttctgtatatgacacaaatac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagcagtgggttcttatgctttgcatagagaataccattttctgtatatgacacaaatac 803
Query: 605 agctgaaaacaaaagttatgcatgaaactatcacacatgggcagaaaataaataagtgtc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agctgaaaacaaaagttatgcatgaaactatcacacatgggcagaaaataaataagtgtc 863
Query: 665 ttaataacactacaaacttggccttgcctttaactaccaattaatggaaac 715
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttaataacactacaaacttggccttgcctttaactaccaattaatggaaac 914
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1114
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1104
Effective search space: 778320
Effective search space used: 778320
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no513_a22.g1 MSMg01no513_a22.g1 CHROMAT_FILE:
MSMg01no513_a22.g1 PHD_FILE: MSMg01no513_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:26 2005
(568 letters)
>mm_chr1_37135641_37136608
Length = 968
Score = 648 bits (335), Expect = 0.0
Identities = 347/351 (98%), Gaps = 1/351 (0%)
Strand = Plus / Minus
Query: 216 tagctacctgcaagccagtcttctcctagctgccttcaggacaagaggtggaactctcat 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 tagctacctgcaagccagtcttctcctagctgccttcaggacaagaggtggaactctcat 909
Query: 276 gt-tgcctggacgctgccatgctctcaccttgatattggactgaacctctgaacctgtaa 334
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gtctgcctggacgctgccatgctctcaccttgatattggactgaacctctgaacctgtaa 849
Query: 335 gccagccctaattaaatattgtccttacaagacttgccttggtcatggtgtctgttcaca 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gccagccctaattaaatattgtccttacaagacttgccttggtcatggtgtctgttcaca 789
Query: 395 gcagtaaaacccgaactaagacatttagtaaacctgaattaaccattcctattctgggga 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gcagtaaaacccgaactaagacatttagtaaacctgaattaaccattcctattctgggga 729
Query: 455 ggaacaccccttgctgataatcatgttccctgggctctctggtggtactggtgagctgac 514
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 728 ggaacaccccttgctgataatcatgttccccgggctctctggcggtactggtgagctgac 669
Query: 515 ggcggagacctgagcgcatggaaaacaggaaaagtaaacgtattcctgcca 565
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 668 ggcggagacctgagcgcatggaaaacaggaagagtaaacgtattcctgcca 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
