Query= MSMg01no513_a23.b1 MSMg01no513_a23.b1 CHROMAT_FILE:
MSMg01no513_a23.b1 PHD_FILE: MSMg01no513_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:26 2005
(688 letters)
>mm_chr1_197035190_197036276
Length = 1087
Score = 1228 bits (635), Expect = 0.0
Identities = 672/687 (97%), Gaps = 9/687 (1%)
Strand = Plus / Minus
Query: 4 ggaattccaatatgtataatttatgtatgctgccatttcttctaagttcatcaacatccc 63
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 818 ggaattccaatatgtataatttatgtatgctgccatttcttataagt---tcaacatccc 762
Query: 64 agagctatcaaaaaatccatcccttgtctgctgtttcattgaccctttggtgtctgtgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agagctatcaaaaaatccatcccttgtctgctgtttcattgaccctttggtgtctgtgaa 702
Query: 124 gctgaatatctgatgattttggtatctttggaacccatcctctataggcatggatggatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gctgaatatctgatgattttggtatctttggaacccatcctctataggcatggatggatg 642
Query: 184 actatactcacatataaccaattcttaaccactaaaaaccattttttttctctgaagtaa 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 641 actatactcacatataaccaattcttaaccactaaaaacca-tttttttctctgaagtaa 583
Query: 244 gtttcatgtgccccactttgtctcttccaagctccttatttatttttttcaaaagtaaaa 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtttcatgtgccccactttgtcttttccaagctccttatttatttttttcaaaagtaaaa 523
Query: 304 atctttttacatttcaaataaaagagctgaagttttacagattatttttga---tttttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 522 atctttttacatttcaaataaaagagctgaagttttacagattatttttgattttttttt 463
Query: 361 ttttgtgcaaatttcaacatgttctcagggtttaaaaagttaaatttaaatggtcaatag 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttttttgcaaatttcaacatgttctcagggtttaaaaagttaaatttaaatggtcaatag 403
Query: 421 aataggaaagagaatagagaaattaccagaaagaggccatttatactttaaaatattatg 480
||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 402 aataggaaagaaaatagagaaattaccagaaataggtcatttatactttaaaatattatg 343
Query: 481 cagataaataatcatagttaaaataaagatgaaaataaaagtgatacatgattggggaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cagataaataatcatagttaaaataaagatgaaaataaaagtgatacatgattggggaga 283
Query: 541 aaattataaaaattataaagaagataaatacaaattattcataatcacaccacaaaatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aaattataaaaattataaagaagataaatacaaattattcataatcacaccacaaaatta 223
Query: 601 agatttttttagcactta-ct-tctctctctctctctctctctctctctctctctgtgtg 658
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 222 agatttttttagcacttacctctctctctctctctctctctctctctctctctctgtgtg 163
Query: 659 tgtgtgtgtgtgtgtgtgtgtgtgtgt 685
|||||||||||||||||||||||||||
Sbjct: 162 tgtgtgtgtgtgtgtgtgtgtgtgtgt 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1087
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1077
Effective search space: 730206
Effective search space used: 730206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_a23.g1 MSMg01no513_a23.g1 CHROMAT_FILE:
MSMg01no513_a23.g1 PHD_FILE: MSMg01no513_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:26 2005
(624 letters)
>mm_chr1_196857509_196858536
Length = 1028
Score = 1187 bits (614), Expect = 0.0
Identities = 623/628 (99%), Gaps = 4/628 (0%)
Strand = Plus / Plus
Query: 1 tttagaggatagtggcaaaaaaaatctgtgtatttaaggtaaaggtgtagttcatattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagaggatagtggcaaaaaaaatctgtgtatttaaggtaaaggtgtagttcatattta 260
Query: 61 tatatacatgctcatggacaatgattggagtgcaggaatgcaaaacctggagatatacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatacatgctcatggacaatgattggagtgcaggaatgcaaaacctggagatatacag 320
Query: 121 agctgactatagttgcctttgaagttacattgctacattcttgaagtatagttcttctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgactatagttgcctttgaagttacattgctacattcttgaagtatagttcttctgg 380
Query: 181 tatcagtgaatggagtgactttgatttagagtgtaagtggactgcccactgcagggaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcagtgaatggagtgactttgatttagagtgtaagtggactgcccactgcagggaccc 440
Query: 241 ttccgtctccaggtttagcttcctattggcctcaggagagaactgttttccctatagtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccgtctccaggtttagcttcctattggcctcaggagagaactgttttccctatagtat 500
Query: 301 gtacctaatttttgggaagtggttgtttaggtatgcaaattctaaacctaattagctgtt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gtacctaatttttgggaagtggttgtttaggtatgcaaatcctaaacctaattagctgtt 560
Query: 361 atttcttttcagctcaaatcctaatggccttggatgtctaagaccttggatgtcactttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttcttttcagctcaaatcctaatggccttggatgtctaagaccttggatgtcactttg 620
Query: 421 ctaggtaagaaaggctagagtgagttggcacagaggaggggacactgcctttggccactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaggtaagaaaggctagagtgagttggcacagaggaggggacactgcctttggccactg 680
Query: 481 gctgctctccaaaacaggtgaactttgtgtttgaaaggaatgcatttaatcatttgggcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgctctccaaaacaggtgaactttgtgtttgaaaggaatgcatttaatcatttgggcc 740
Query: 541 taatagaagttacttgtattttctctcctttttgcccctcctgtctctcctttacccccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatagaagttacttgtattttctctcctttttgcccctcctgtctctcctttacccccc 800
Query: 601 cccc----ttgctgcttcctcaaccacc 624
|||| ||||||||||||||||||||
Sbjct: 801 ccccccccttgctgcttcctcaaccacc 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1028
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1018
Effective search space: 625052
Effective search space used: 625052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
