Query= MSMg01no513_e03.b1 MSMg01no513_e03.b1 CHROMAT_FILE:
MSMg01no513_e03.b1 PHD_FILE: MSMg01no513_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:41 2005
(489 letters)
>mm_chr1_43143043_43143927
Length = 885
Score = 911 bits (471), Expect = 0.0
Identities = 480/485 (98%), Gaps = 4/485 (0%)
Strand = Plus / Plus
Query: 5 gaattcacagcttgcatggttttcatttaaaatttcatttcatggaagcatctaattatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagcttgcatggttttcatttaaaatttcatttcatggaagcatctaattatc 264
Query: 65 acataaataattgactggctcacaatttctgttcatctaaatccagtacttagtttgctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acataaataattgactggctcacaatttctgttcatctaaatccagtacttagtttgctt 324
Query: 125 taaatccacttttaaggaccatttctcagataccaaaaactagctttggcattttctcgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaatccacttttaaggaccatttctcagataccaaaaactagctttggcattttctcgt 384
Query: 185 tccatggtagggttgtcttgtttggtttggtttggtttggtttggcttatggagtcatac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccatggtagggttgtcttgtttggtttggtttggtttggtttggcttatggagtcatac 444
Query: 245 tagaagtgaaaagaaatcaaatggtcattctgacatttggaccagagttcagtccaatgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagaagtgaaaagaaatcaaatggtcattctgacatttggaccagagttcagtccaatgg 504
Query: 305 aaaggtgggcagcaatgtggatggaccctgtacccagaatggtaggtcactctggtcttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaggtgggcagcaatgtggatggaccctgtacccagaatggtaggtcactctggtcttt 564
Query: 365 aaggtgctttataaagaaagggacagaacaaacaatgcttccacagggaagcctttgaaa 424
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 565 aaggtgctttataaagaaagggacagaacaa----tgcttccgcagggaagcctttgaaa 620
Query: 425 agagataaggcaaggctgcccttggagagatggaaagaaagaggaggggaggggaaggga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagataaggcaaggctgcccttggagagatggaaagaaagaggaggggaggggaaggga 680
Query: 485 agaga 489
|||||
Sbjct: 681 agaga 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 885
Length adjustment: 10
Effective length of query: 479
Effective length of database: 875
Effective search space: 419125
Effective search space used: 419125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_e03.g1 MSMg01no513_e03.g1 CHROMAT_FILE:
MSMg01no513_e03.g1 PHD_FILE: MSMg01no513_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:41 2005
(371 letters)
>mm_chr1_43302143_43302911
Length = 769
Score = 652 bits (337), Expect = 0.0
Identities = 363/373 (97%), Gaps = 6/373 (1%)
Strand = Plus / Minus
Query: 1 attctttaagaaagcattcaaataccaaacgagaagttataaaaataaaactgtaatagt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 569 attctttaagaaagcattcaaataccaaacgagaagttttaaaaataaaactgtaatagt 510
Query: 61 agtgatgaaaattccattagacatttgaaagtttaaaatagagaaaaacatttcagaatt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agcgatgaaaattccattagacatttgaaagtttaaaatagagaaaaacatttcagaatt 450
Query: 121 gtataaaacagaaccatgttggctgagcacttcaccaaaatggatgcaannccatcggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 449 gtataaaacagaaccatgttggctgagcacttcaccaaaatggatgcaa--ccatcgg-a 393
Query: 181 tttaccttccaccatctttgtttgtgacatcatgaaaattgtcataaccaggtgatttca 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 392 tttaccttccaccatctttgtttgtgacatcatgaaaattgtcataaccaagtgatttca 333
Query: 241 ccatcttagtcagtgcaaccatggatcttgaaccaaatggcgtcacccataaaactttta 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 332 ccatcttagtcagtgcaaccatggatcttgaaccaagtggcgtcacccataaaactttta 273
Query: 301 gccccatggaaccctcagggggatcaccctttatattagactaacaaa--aacaccagac 358
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 272 gccccatggaaccctca-ggggatcaccctttatattagactaacaaaataacaccagac 214
Query: 359 ttccctggttgtt 371
|||||||||||||
Sbjct: 213 ttccctggttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 769
Length adjustment: 9
Effective length of query: 362
Effective length of database: 760
Effective search space: 275120
Effective search space used: 275120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
