Query= MSMg01no513_o18.b1 MSMg01no513_o18.b1 CHROMAT_FILE:
MSMg01no513_o18.b1 PHD_FILE: MSMg01no513_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:36 2005
(625 letters)
>mm_chr1_77950731_77951755
Length = 1025
Score = 1178 bits (609), Expect = 0.0
Identities = 618/621 (99%)
Strand = Plus / Plus
Query: 5 gaattctgagtgcttttcattattcttatttatgagatgagggatcaaatcttttcttct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgagtgcttttcattattcttatttatgagatgagggatcaaatcttttcttct 264
Query: 65 tttagttgagtggtaattaataagggcaaatatgaatgtaaaaggacaattaattcaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttagttgagtggtaattaataagggcaaatatgaatgtaaaaggacaattaattcaata 324
Query: 125 tattggataatagatggcatttttccagtgatcaattactaggtgagggtcacatggata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattggataatagatggcatttttccagtgatcaattactaggtgagggtcacatggata 384
Query: 185 catgtttatgtactgacccatttatatcttagaatatttctgaaagaaaagccccattcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgtttatgtactgacccatttatatcttagaatatttctgaaagaaaagccccattcc 444
Query: 245 ctaaagaaatttgggtttggtttggttactatcacaatgaaataatttgtaaatagcaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaaagaaatttgggtttggtttggttactatcacaatgaaataatttgtaaatagcaga 504
Query: 305 ctctagactaaaaccatggagcatatgacttcataccaggtgacttgaagctaccacatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctagactaaaaccatggagcatatgacttcataccaggtgacttgaagctaccacatt 564
Query: 365 ccacaccaatcaccctgtgcaagctaccacctgtctcctaccacgtccagggtactgggc 424
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccataggaatcaccctgtgcaagctaccacctgtctcctaccacgtccagggtactgggc 624
Query: 425 tccataaatggctaccgaggaacctcttgtttctaggtttgtgtctttgctgttggtcac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccataaatggctaccgaggaacctcttgtttctaggtttgtgtctttgctgttggtcac 684
Query: 485 agtgaaaaacatgctcctctatgctgtcttctaagctacatcctttcttgattgatgctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtgaaaaacatgctcctctatgctgtcttctaagctacatcctttcttgattgatgctt 744
Query: 545 atattttgttctacttcctccaagaaatgtcctaagattatcatcaccacaatcaactcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atattttgttctacttcctccaagaaatgtcctaagattatcatcaccacaatcaactcc 804
Query: 605 tcatatgctatgtccctaatt 625
|||||||||||||||||||||
Sbjct: 805 tcatatgctatgtccctaatt 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_o18.g1 MSMg01no513_o18.g1 CHROMAT_FILE:
MSMg01no513_o18.g1 PHD_FILE: MSMg01no513_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:36 2005
(624 letters)
>mm_chr1_78133713_78134736
Length = 1024
Score = 1056 bits (546), Expect = 0.0
Identities = 573/582 (98%), Gaps = 1/582 (0%)
Strand = Plus / Minus
Query: 1 ctattttggttcatttctgccatgcctcttcaaaaggatagtgtgttttgtgtgtgtatt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ctattttggttcatttctcccatgcctcttcaaaaggatagtgtgttttgtgtgtgtatt 523
Query: 61 tgtgcatgtgtgtatgcgtttgtatatgtgtacatatatgtgtatgtgtgtgtatgctac 120
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgtgcatgtgtgtttgtgtttgtatatgtgtacatatatgtgtatgtgtgtgtatgctac 463
Query: 121 ttagggtataccaagtgacaagcgaagcctgtcctctgaagtcacacaggcctgggacaa 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 462 ttagggtataccaagtgacaagcgaagcctgtcttctgaagtcacacaggcctgggacaa 403
Query: 181 atctttgactgcatgagctgaatgaccctggggttctccatttcctttgctgtgcccaag 240
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 402 atctttgactgcatgagctgaataaccctggggttctccatttcttttgctgtgcccaag 343
Query: 241 gtgatgagtctttctttgctttgccaagagagagaaagggagggagagagagagatcgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtgatgagtctttctttgctttgccaagagagagaaagggagggagagagagagatcgtc 283
Query: 301 catcatcttaaaacgtttgatccatggcaccttgagaaatggcactaaagcggtgtggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 catcatcttaaaacgtttgatccatggcaccttgagaaatggcactaaagcggtgtggaa 223
Query: 361 gtcagagtctgcactacggagggaatttgaaaacagagtaaaaacaaacaagacaaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gtcagagtctgcactacggagggaatttgaaaacagagtaaaaacaaacaagacaaaaca 163
Query: 421 ttcacagtgaagtgaccttcagggttgggatttaaaagaatctgagtgtgttacagttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ttcacagtgaagtgaccttcagggttgggatttaaaagaatctgagtgtgttacagttca 103
Query: 481 aagcaatagcatttgcattttagactgtgcttacagtgcgatgcatacaggtgtgta-tt 539
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 102 aagcaatagcatttgcattttagaccatgcttacagtgcgatgcatacaggtgtgtattt 43
Query: 540 ttttttaaatgagagctattctgaaagttgaactttgaaaac 581
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ttttttaaatgagagctattctgaaagttgaactttgaaaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
