XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTG
AAGAAATTGATGGGGACCTTCATGGGGCAGCAAGGCATTGTGAATCTCCC
AAAATAATGGACCACAGAAGGCACATCACCAGTTCACTTTCTAAATACAA
CATTTTAATCAGTCTAGAGATACAGAACATTCTATAGTCTGGGCTTGCTA
AAGCAAAAGTAGTCCTATTCCTTCTGAGGCATGTAAAACCATGGCCTAAA
GAAATGGCCTAAAGAAGAAGAAAGAAAGAAAAGAAGGAAGAGAGGAAGAG
AGAGAGAGAGAGAGAGAGGAAGAGAGAGAGTGAGAGAGAGGGGGGGCAAC
AAACAGGAGAGTCAATTATGGCAAAGTATACTTAAGTTTAACTATGATAG
GTAAAGGAAAAATTATACTCACTGTTCCATTCTGTGTTCATTTAAAACCC
CAAATTTAATTTTTTAAAAACTGGAGATATGTTTTGCTCCATGGTATAAA
ACAAACTAGGAGCCATTTCTACCTGCTTTGCACTCCAATGAACAATTATA
GAAAAGCTATAACTGTCATTAAAGTGAATGTTAGACAATGGAAATTGAAA
TGATAGTTTCAGCTAAATATCTTAAACATAGAAGCTGTATTGGTAGTGTA
AACCAACATACCTTTTGTTGGAGACTGAGCTATCTGAAAGCACTGCCAAG
CTTCCTTTTTTCTAAGTAAATTAATCACTTCTAGAAACTTGTTTTCTTCA
GAACCC

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGTTCAGCTCTGTTCTGCATTTTTTGATAGAG
TTATTTGGTTTTTTGAAATATACAGTCTGTTAGTCTATGTCTTTTTGTTG
GGTAATTGAACCCATTGATGTTAAGAGATAGTAAGGAATAATGATTGTTG
CTTCTGGTTATTTTTGTTGTTAGAAGTGGAACTATTTTTCTGTGACTATC
TTCTTTTTGGCTTGTTGAAAGATTACTTTCTTGCTTTTTCTAGGGTACTG
TAGTTTCCTTCCTTGTGTTAGAGTTTTCCATCTATTATCCTTTGTAGGGC
TGGATGTGTGGAAATATATTGTCTAAATTTGGATTTGTCATGGGATATCT
TGGTTTATCTATCTATGGTAATTGAGAGTTTTGCTGGGCATAGCAGCCTG
GGCTGGAATTTGTATTCTCTTAGAGTCTGTATGACAGCTGTTCAGGATCT
TCTAGCTTTCATAGTCTTTGTTGAGAAGTCTGCAGTAATTCTGATAGGTC
TGTCTTTATATGTTACTTGAACTTATTTCCCTTATTACTTTTAATATTCT
GTCTTTATTTAGTGCATTTATTGTTTTGACTATTATGTGACAGGAGGAAT
TTCTTTTCTGGTCCAGTGTATTTATAGTTCTGTAGGCTTCTTGTATGTTC
TTGGTCATCTCTTTCTTTAGGTTAGGGAAGATTTCTTCTGTAATTTTGTT
GAGATATTTACTGG

Query= MSMg01no513_o20.b1 MSMg01no513_o20.b1 CHROMAT_FILE:
MSMg01no513_o20.b1 PHD_FILE: MSMg01no513_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:37 2005
         (674 letters)



>mm_chr1_3376128_3377201
          Length = 1074

 Score =  924 bits (478), Expect = 0.0
 Identities = 556/600 (92%), Gaps = 33/600 (5%)
 Strand = Plus / Minus

                                                                        
Query: 72   atggaccacagaaggcacatcaccagttcactttctaaatacaacattttaatcagtcta 131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 atggaccacagaaggcacatcaccagttcactttctaaatacaacattttaatcagtcta 1015

                                                                        
Query: 132  gagatacagaacattctatagtctgggcttgctaaagcaaaagtagtcctattccttctg 191
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1014 gagatacagaacattctatagtttgggcttgctaaaggaaaagtagtcctattccttctg 955

                                                                        
Query: 192  aggcatgtaaaaccatggcctaaagaaatggcctaaagaagaagaaagaaagaaaagaag 251
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 954  aggcatgtaaaaccatggcctaaagaaatggcctaaagaaaaagaaagaaagaaaagaag 895

                                                                        
Query: 252  gaagagaggaagagagagagagagagagagaggaagagagagagtgagagagaggggg-g 310
            ||||||||||||||||||||||         ||                    ||||| |
Sbjct: 894  gaagagaggaagagagagagag---------gg--------------------gggggcg 864

                                                                        
Query: 311  gcaacaaacaggagagtcaattatggcaaagtatacttaagtttaactatgataggtaaa 370
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 863  gcaacaaacaggagagtcaattatggcaaagtatacttaagtttgactatgataggtaaa 804

                                                                        
Query: 371  ggaaaaattatactcactgttccattctgtgttcatttaaaaccccaaatttaatttttt 430
            ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 803  ggaaaaagtatactcactgttccattctgtgttcatttaaaaccccaaattcaattttta 744

                                                                        
Query: 431  aaaaactggagatatgttttgc-tccatggtataaaacaaactaggagccatttctacct 489
            ||||| |||||||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct: 743  aaaaaatggagatatgtttt-cttccatggtataaaacaaactgggagccatttctacct 685

                                                                        
Query: 490  gctttgcactccaatgaacaattatagaaaagctataactgtcattaaagtgaatgttag 549
            ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684  gctttgctctccaatgaacaattgtagaaaagctataactgtcattaaagtgaatgttag 625

                                                                        
Query: 550  acaatggaaattgaaatgatagtttcagctaaatatcttaaacatagaagctgtattggt 609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624  acaatggaaattgaaatgatagtttcagctaaatatcttaaacatagaagctgtattggt 565

                                                                        
Query: 610  agtgtaaaccaacataccttttgttggagactgagctatctgaaagcactgccaagcttc 669
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 564  agtgtaaaccaacataccttttg-tggagactgagctatctgaaagcactgccaagcttc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)