Query= MSMg01no514_a12.b1 MSMg01no514_a12.b1 CHROMAT_FILE:
MSMg01no514_a12.b1 PHD_FILE: MSMg01no514_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:45 2005
(666 letters)
>mm_chr1_137355126_137356191
Length = 1066
Score = 1282 bits (663), Expect = 0.0
Identities = 663/663 (100%)
Strand = Plus / Plus
Query: 4 ggaattctgcctcttgatccggagttctattggccagaacaagtggtaagaacgcagaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcctcttgatccggagttctattggccagaacaagtggtaagaacgcagaga 263
Query: 64 tagatttagagaagatgcgaggcttagggagaggctagctacagcagataagagtggggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagatttagagaagatgcgaggcttagggagaggctagctacagcagataagagtggggg 323
Query: 124 ggggcccagcaactcctaggtacacactaatttggtggattattcatccaatggacattt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggggcccagcaactcctaggtacacactaatttggtggattattcatccaatggacattt 383
Query: 184 atagagttacagttatgcctcaacacggaagaggatgcaactgtgaaaaaagaacaattc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atagagttacagttatgcctcaacacggaagaggatgcaactgtgaaaaaagaacaattc 443
Query: 244 ctattctcaagaagctcccagtcctgagctgggcgtggtggtacacgcctttaatcccaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctattctcaagaagctcccagtcctgagctgggcgtggtggtacacgcctttaatcccaa 503
Query: 304 cactcaggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cactcaggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagag 563
Query: 364 agccccagggcagccagggctacacagagaaaccctgtctaaaaaaagctcccagtccaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agccccagggcagccagggctacacagagaaaccctgtctaaaaaaagctcccagtccaa 623
Query: 424 gttgggcatgatagtgcccaacacttggaaggccacaggattttgagttctgggctagcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gttgggcatgatagtgcccaacacttggaaggccacaggattttgagttctgggctagcc 683
Query: 484 cgggtcatataacaagaccctctccaaagcaaaaataaaacaaaaacaaaaccacaacaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cgggtcatataacaagaccctctccaaagcaaaaataaaacaaaaacaaaaccacaacaa 743
Query: 544 aaagaagcaccaatgtagataagaaatagaaggatttagtaataaactcagattggctag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaagaagcaccaatgtagataagaaatagaaggatttagtaataaactcagattggctag 803
Query: 604 ttgtaaaaaagctggtcctgaacatttttatgcggacatcctctacctgtgcctgcctgc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgtaaaaaagctggtcctgaacatttttatgcggacatcctctacctgtgcctgcctgc 863
Query: 664 ctg 666
|||
Sbjct: 864 ctg 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_a12.g1 MSMg01no514_a12.g1 CHROMAT_FILE:
MSMg01no514_a12.g1 PHD_FILE: MSMg01no514_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:46 2005
(585 letters)
>mm_chr1_137506991_137507976
Length = 986
Score = 1094 bits (566), Expect = 0.0
Identities = 581/590 (98%), Gaps = 9/590 (1%)
Strand = Plus / Minus
Query: 1 tcttaaagacgtagtttccagagggatgatggtctgaggagcctagctggatttggtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tcttaaagacgtagtttccagagggatgatggtctgaggagcctagctggatttggtcct 660
Query: 61 cacattgtatttggattgggatcaacaatggaagcagaaattggccatgcaggagctaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cacattgtatttggattgggatcaacaatggaagcagaaattggccatgcaggagctaac 600
Query: 121 caaggaggtagaccatagacgtgccacgtcttgagcttgggtacagtagtctaaagcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 caaggaggtagaccatagacgtgccacgtcttgagcttgggtacagtagtctaaagcttt 540
Query: 181 tgctgtgggtggactgctggttagctcaacatctcagagcctggcacagctcagtgttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgctgtgggtggactgctggttagctcaacatctcagagcctggcacagctcagtgttct 480
Query: 241 aggca---t--gtttttatgtagctgaccactaaaggatgggtaggactgggtaaaagga 295
||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aggcagggtcag----tatgtagctgaccactaaaggatgggtaggactgggtaaaagga 424
Query: 296 ggatgacagactaaatccactctcagccccactagggccatggactaaagctgggggctc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggatgacagactaaatccactctcagccccactagggccatggactaaagctgggggctc 364
Query: 356 tctcctggtggaaggactcagggtctgtacctcagtatttgtcaatattatcctgccttc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctcctggtggaaggactcagggtctgtacctcagtatttgtcaatattatcctgccttc 304
Query: 416 attttttttcaggcttagcctgggcaggttgaatacttttccatgttctagcagatacag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 attttttttcaggcttagcctgggcaggttgaatacttttccatgttctagcagatacag 244
Query: 476 gcaatacttgcctgagctactcctagatttctttgggagtaacttaaagtttccattgct 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcaatacttgcctgagctactcctagatttctttgggagtaacttaaagtttccattgct 184
Query: 536 gtgaagagacactatgaccaaggcaactctttttttgggagggggggtgg 585
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtgaagagacactatgaccaaggcaactctttttttgggagggggggtgg 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space: 561200
Effective search space used: 561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
