XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GGCCCATACCTAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCCAA
CATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGA
CTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAA
GTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAAT
TGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTAT
ATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAAC
AGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGC
CTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA
CACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTA
ACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAA
AGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCCTGGA
TTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC
AGATTCAAAGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATT
AGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAG
NCAAAACTN

TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAAGAGTAGGAGAGGTGCACACAAGAAAGTA
CTTAGAGGTGAATGAGATGGATATATGAGGTAAAAATACAAAAGAATCAA
TCCAATACAAATATTATTTTGAAAAAATAATGTATTGTGAATTGGATACT
ATTAAGGTCACATGTCCCTCACTAATCTATCCATTTTAGTATTGTGTACA
AACATTAGGGATTACTTTTTAGAAATATATTGTTCTATCTATAAAATGCC
ATATGAAATATGAGACATAGTCTATCTAATGTTTATTAGTTAAAAATTTA
AAAAGTGATAAAAGAAAAAATGCAAACTGTACAAAGGGAAAATAGAGCTT
AATAATAATCTCATATAGGTGTTTCATGTCATAACTACGGTATGGAGCCA
AGACCTTTCAAATGCAGTTTCTGTCCTCCGGATCCAGGCTACAGCTCTTT
TGTTATATCAGAATGGTTTCTTTCTTCCTCTTCCTCTTCCTCTTCCTCTT
CCTCTTCCTCTTCCTCTTCCTCTTCCCCTCCCTCCCTCCCTCTCTCCCTC
CCTCCCTNCCTCCCTTCCTCCNTTTTCTCTTTCTTCCCTTCCTCCCTTCC
TCTCTTTCTTCCTTCCTTCTCCTTCCCTTTCTTCNTTCTTTCCTCTCCTT
CCCTCCCTTCTTCCTTTTCCTCCCCTTCCTCTTCCCTCTCTTTCCTCCTC
TC

Query= MSMg01no514_b13.g1 MSMg01no514_b13.g1 CHROMAT_FILE:
MSMg01no514_b13.g1 PHD_FILE: MSMg01no514_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:51 2005
         (540 letters)



>mm_chr1_143718159_143719098
          Length = 940

 Score =  799 bits (413), Expect = 0.0
 Identities = 477/499 (95%), Gaps = 5/499 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaagagtaggagaggtgcacacaagaaagtacttagaggtgaatgagatggatatatga 60
           ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 651 acaagggtaggagaggtgcgcacaagaaagaacttagaggtgaatgagatggatatatga 592

                                                                       
Query: 61  ggtaaaaatacaaaagaatcaatccaatacaaatattattttgaaaaaataatgtattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggtaaaaatacaaaagaatcaatccaatacaaatattattttgaaaaaataatgtattgt 532

                                                                       
Query: 121 gaattggatactattaaggtcacatgtccctcactaatctatccattttagtattgtgta 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 531 gaattggatactattaaggtcacatgtcccttactaatctatccattttagtattgtgta 472

                                                                       
Query: 181 caaacattagggattactttttagaaatatattgttctatctataaaatgccatatgaaa 240
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 471 caaacattagggattactttttagaaatatattgttctacctacaaaatgccatatgaaa 412

                                                                       
Query: 241 tatgagacatagtctatctaatgtttattagttaaaaatttaaaaagtgataaaagaaaa 300
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 411 tatgagacataatctatctaatgtttattagttaaaaattt-aaaagtgataaaagaaaa 353

                                                                       
Query: 301 aa-tgcaaactgtacaaagggaaaatagagcttaataataatctcatataggtgtttcat 359
           || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct: 352 aaatgcaaactgtacaaaggaaaaatagagcttaataataatctcatttaggtgtttcgt 293

                                                                       
Query: 360 gtcataactacggtatggagccaagacctttcaaatgcagtttctgtcctccggatccag 419
           |||||||||| || | |||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtcataactaaggcacggagctgagacctttcaaatgcagtttctgtcctccggatccag 233

                                                                       
Query: 420 gctacagctcttttgttatatcagaatggtttctttcttcctcttcctcttcctcttcct 479
           ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 232 gcttcagctcttttgttatatcagaatggtttttttcttcctcttcctcttcctcttcct 173

                              
Query: 480 cttcctcttcctct-tcct 497
           ||||||||  |||| ||||
Sbjct: 172 cttcctct--ctctctcct 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)