Query= MSMg01no514_b14.b1 MSMg01no514_b14.b1 CHROMAT_FILE:
MSMg01no514_b14.b1 PHD_FILE: MSMg01no514_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:51 2005
(666 letters)
>mm_chr1_35563609_35564675
Length = 1067
Score = 1127 bits (583), Expect = 0.0
Identities = 644/679 (94%), Gaps = 25/679 (3%)
Strand = Plus / Plus
Query: 1 gagacaagaacct-aaagttatcagcttagaatgactttggtgaccattgggtttttggg 59
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagacaagaacctaaaagttatcggcttagaatgactttggtgaccattgggtttttggg 260
Query: 60 gatcctaactccccaagccaagaagagtcccattgttctcaaagataccccaatacttcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcctaactccccaagccaagaagagtcccattgttctcaaagataccccaatacttcc 320
Query: 120 atattagaaacagaagttgcttccttctgtggcaatgctggagggatttggactttctgt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 atattagaaacagaagttgcttccttctgtggcaatgctggagggatttggactttttgt 380
Query: 180 ttgggtgctgatggtaatctaagttggctttcattgtctgggttactttctctccaaagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggtgctgatggtaatctaagttggctttcattgtctgggttactttctctccaaagt 440
Query: 240 ttaatttctccccaatgttttatttctctccatcatttaatgattctgtgataaaggttc 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ttaatttctccccaatgttttatttctctccatcgtttaatgattctgtgataaaggttc 500
Query: 300 cctctgtgacacctagaattttttcaatttattctttatcacttttaatgtgtgtgtgtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 cctctgtgacacctagaattttttcaatttattctttatcacttttaatgtgtgtatgtg 560
Query: 360 tgtgtgtgtgtgtgtgtgtttgtatatgcatgtctatgcgtatggacaagtacatgtagg 419
||||||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct: 561 tgtgtgt------------ttgtatatgcatgtgtatgtgtatggacaagtacatgtagg 608
Query: 420 tggtgtgtgtgtgtgtgtgtgtgtgt------------atgcacatgcacatgtatgtgg 467
|||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 609 tggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcacatacacatgtatgtgg 668
Query: 468 tgttgttactgttgtagaaaattttaattccaatctggggtctctactttgtcttttgcc 527
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 669 tgttgttactgttgtagaaaattttaattccaatctggggtctctactctgccttttgcc 728
Query: 528 atttagttcccagataaaagacacacacaatctgtatatatttacaataagtcttaagta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 729 atttagttcccagataaaagacacacacaatctgtatatatttacaataagtcttaaata 788
Query: 588 gcattagagttatgcagatatttaccctctatgctactagaatctactctcttcctttcg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gcattagagttatgcagatatttaccctctatgctactagaatctactctcttcctttcg 848
Query: 648 ccctttcgataacctcaaa 666
|||||||||||||||||||
Sbjct: 849 ccctttcgataacctcaaa 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_b14.g1 MSMg01no514_b14.g1 CHROMAT_FILE:
MSMg01no514_b14.g1 PHD_FILE: MSMg01no514_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:52 2005
(643 letters)
>mm_chr1_35714254_35715296
Length = 1043
Score = 1127 bits (583), Expect = 0.0
Identities = 628/643 (97%)
Strand = Plus / Minus
Query: 1 catgctgatagaaagagtggctgaagcctgggtcagcagatggggagcttgtcccccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 catgctgatagaaagagtggctgaagcctgggtcagcagatggggagcttgtcccccaga 784
Query: 61 aagagctttataacttgccagcagaggcaatgatcagtgttgggcagaacatgccttgac 120
|||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||
Sbjct: 783 aagagctttataacttgccagcagagacaatgatcagtgttggacaggacaagccttgac 724
Query: 121 aaggacacttatctatacatcccttgagccctccacctagacctatacctcatgccaggc 180
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 723 caggacacttatctatgcatcccttgagccctccacctaaacctatacctcatgccaggc 664
Query: 181 ctctgaagatggacttccaggttactgggcctctttgtccccatttccaatgtgaccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ctctgaagatggacttccaggttactgggcctctttgtccccatttccaatgtgaccaca 604
Query: 241 ttgactaacctcctttcactgcttgtcactattaatctgtctctttaattggcttatcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttgactaacctcctttcactgcttgtcactattaatctgtctctttaattggcttatcgg 544
Query: 301 gactggaccgctgagcctggcatattaggtctgccagagcccaggttctagtcttcaagg 360
||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||
Sbjct: 543 gactggaccgctgagcctggcatattagggctgccagggcccaggttctggtctttaagg 484
Query: 361 cctttgagacaatgtgacactaaagaaattgcttaatggaaaccaaccaactgataatga 420
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 483 cctttgagacaatgtgacactaaagaaattgcctaatgaaaaccaaccaactgataatga 424
Query: 421 aatctcattcaactgaaaagtgtctcctcttgaggagactcagcaagacatgaaggaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatctcattcaactgaaaagtgtctcctcttgaggagactcagcaagacatgaaggaagg 364
Query: 481 ggctgggaggaaatatttgcttacgcccgatgagaaccttgcacacagatttataaagag 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 363 ggctgggaggaaatatttgcttacgcccgttgagaaccttgcacacagatttataaagag 304
Query: 541 caccccaagctcaacaagaaaacaatcagccccaataaaattctgaaagactagaacatc 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 caccccgagctcaacaagaaaacaatcagccccaataaaattctgaaagactagaacatc 244
Query: 601 aattttcccaaataaatggtgcaaacaggaacacaacccccac 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aattttcccaaataaatggtgcaaacaggaacacaacccccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
