Query= MSMg01no514_d18.b1 MSMg01no514_d18.b1 CHROMAT_FILE:
MSMg01no514_d18.b1 PHD_FILE: MSMg01no514_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:03 2005
(614 letters)
>mm_chr1_127044278_127045291
Length = 1014
Score = 1104 bits (571), Expect = 0.0
Identities = 601/611 (98%), Gaps = 1/611 (0%)
Strand = Plus / Plus
Query: 5 gaattctctggtttttcatctcatgccgaaaacactgtgtcctctggcatccccaggaca 64
|||||||||||||||| || |||||| | |||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggtttttaatttcatgctggaaacactgtgtcctctggcatccccaggaca 264
Query: 65 gtcaagcagaagcataatattctacaatactgatgaattctcatgctacttgaataagac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcaagcagaagcataatattctacaatactgatgaattctcatgctacttgaataagac 324
Query: 125 cagctctttcttccactctatattctggtttcttttctgttgctatgccaagtcacactg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagctctttcttccactctatattctggtttcttttctgttgctatgccaagtcacactg 384
Query: 185 aag-aaaaaaaactttgggggagaaagtggcttatttcagttcacagttccaggctacag 243
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaaaaaaaaactttgggggggaaagtggcttatttcagttcacagttccaggctacag 444
Query: 244 tccatattttagagaagtcaaccaggaacttcaaacagctagtcacatcacatccaccat 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 445 tccatattttagagaagtcaaccaggaacttcaaacatctagtcacatcacattcaccat 504
Query: 304 tcacaagcacagagaaagaaatgcatagaggaccacctgcttgctttttctcagctcagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcacaagcacagagaaagaaatgcatagaggaccacctgcttgctttttctcagctcagt 564
Query: 364 ctctacactcaaacaattcagtacccactgtctagggaatggtgtttcccacagtgggct 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 ctctacactcaaacaattcagtacccactgtctagggaatggtgttttccacagtgggct 624
Query: 424 ggacatcagttaacttaagacagtctttaactggacaacccaatgcagacaatccctcat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggacatcagttaacttaagacagtctttaactggacaacccaatgcagacaatccctcat 684
Query: 484 tgagcctctccccagatgattctaggttgtgtcaagttgacaattaaagctaagcatcac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgagcctctccccagatgattctaggttgtgtcaagttgacaattaaagctaagcatcac 744
Query: 544 aatgaccatactttcaagtaagttagcatatgaccgggagtcaaggttgggaaaagaaga 603
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 745 aatgaccatactttcaagtaagttagcatatgaccgggaatcaaggttgggaaaagaaga 804
Query: 604 gggttagaatg 614
|||||||||||
Sbjct: 805 gggttagaatg 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_d18.g1 MSMg01no514_d18.g1 CHROMAT_FILE:
MSMg01no514_d18.g1 PHD_FILE: MSMg01no514_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:03 2005
(555 letters)
>mm_chr1_127185237_127186191
Length = 955
Score = 623 bits (322), Expect = 0.0
Identities = 456/560 (81%), Gaps = 99/560 (17%)
Strand = Plus / Minus
Query: 1 cataatgcatacaacatatttttaattcactacctactccctctccaactcttccaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 cataatgcatacaacatatttttaattcactacctactccctctccaactcttccaaaat 772
Query: 61 cctatccccctcctcctcccaacttcatgtcctcttaaacacacacacacacacacagac 120
||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cctatccccctcctcctcccaacttcatgtcctcttaa---------------------- 734
Query: 121 acacacagacacacacagacacacacacacacacacacacacacacacacagacacagac 180
|||||||||||||||||||||||||||
Sbjct: 733 ------------------------acacacacacacacacacacacacaca--------- 707
Query: 181 acacacacacacacacacacacacacatacacacaaaacaacaacaacaagaaggtctta 240
| |||||||||||| ||| ||||||||||||||||||||
Sbjct: 706 ------------a-acacacacacac----------aac-acaacaacaagaaggtctta 671
Query: 241 ctaagtagctcttgctggcctagaatgcactatatatatatat-atatatatatatcagt 299
||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 670 ctaagtagctcttgctggcctagaatgcactatatatatatatca-------atatcagt 618
Query: 300 ttggcttctaactcatagaaatcagcttacttgtgcctttcaggtactgggactaatagt 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 617 ttggcttctaactcatagaaatcagcttacctgtgcctttcaggtactgggactaatagt 558
Query: 360 gtgttccactatatttggtttaaaagcatattttattctttgaaaggtctatatatttat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtgttccactatatttggtttaaaagcatattttattctttgaaaggtctatatatttat 498
Query: 420 tctctctctc--tctctctctatatat--atatatatatattgtattcatccaccacaac 475
|| | | | | ||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 --------tcaatatatatatatatataaatatatatatattgtattcatccaccacaac 446
Query: 476 ctttctccaactctccctattgctcctatttctctcacttccaactttgtgtcctttctt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttctccaactctccctattgctcctatttctctcacttccaactttgtgtcctttctt 386
Query: 536 tattttatatttttgttatt 555
||||||||||||||||||||
Sbjct: 385 tattttatatttttgttatt 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 142
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
