BAC Information

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BAC

Clone NameMSMg01-514J03
Chromosome1 (Build37)
Map Location 38,243,142 - 38,243,679
singlet/doubletsinglet
Overlap geneAff3
Upstream gene4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514J03.T7 (MSMg01no514_j03.b1)MSMg01-514J03.TJ (MSMg01no514_j03.g1)
ACCAG587023AG587024
length1,360749
length of high quality
(start - end)
---538 (71 - 608)
definitionCHROMAT_FILE: MSMg01no514_j03.b1 PHD_FILE: MSMg01no514_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:31 2005CHROMAT_FILE: MSMg01no514_j03.g1 PHD_FILE: MSMg01no514_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTNNNNNACCAATCGGNTNACGAGCGAAGGAGNNAAAGAGGGGGGGNN
NNNNNNNAAAGAGCGNNNNNCCCGCGGCGGGGGAGGCGGGGACCTCCAGA
GAGACGGTTNNNCNAACCACCCCACAACCACACACAACCCAGGANNNNNN
NNAAGACGAGGCGGGAAGAAGCAGCCGGCCGCACGTCCCCACCACTCAGC
AAGAGACNCATTTCGCTCCCCCCCGCGCGCGGGCNGNNGTCNTAAACGAC
CCGCCGCGGCGACACGCAGCCAGCGAGGGGGGGGGCCGCCGGNCCCCCCG
CGCGCAGCCCCCNAGAAGNCNNATAGAGGTGGTGTCTCGCGCGCCGAGAG
AGGGAAAGAGACCGCCGCGCGCCNCAGGNNNANAAAAAAAAANTTTTCCN
CTACACACGCGCGACGCACCCCGCACGAAAGGAGGGGTCTTACACCACCC
GCGCGCGGCCNCCACCCCGGCGAAAAAAGCGGCGGGGGGGCGGGGGGGGG
GAGGAGGGGGAGGGGNCGCCGCCACACACACACCCGGACCGTGGGCGCCT
CACCACTCTCCCTCCGTACAGCGCCCACGCGCGGCGGGGGTCGCCCCCCT
CCCCGCGGGTGCCTCTCACGACCCACACGGAAGAGAAAGGGGCGGANGCG
CGGGCGGCGGGCCACTTCTGGCGCTCCCCTCCCCCCCCTGCGCGCCCGCC
CCCCAACCGCGCCCCGCGCGCGGCGGAGNGTGACGCCTCGCACCCTATAC
ACAACACCCCGCTCACCACACCACGGAGGTGCGCGCGAGCACCCCCACCA
CACCACCACGCACCCTNACCACCGCCATCAACACCACCCCGCCGCCCGCG
GCGGGAGGCACCCCCCCGCCCACCGACCCTCTCAACCGACCCCCGCTCGG
AGGAGGAGTAANGAGGGACACACACGGAGCCCGCCGGCGCCCCATGCTCA
CNCCCACCTCGCCGGCGGGGGCGAGTGGCGCCCTCCCGCCACACCCCACC
ACACCCGGCGCCGCGAGAGAGAAGCCGACTCCCACACACAGCCGCACACC
CCTCTACACCACGACTGGACTAGCACAGACCACCGCNTACACATCCACCC
GTCCACAACGACGCGCTCACCCGCTCCGCCACGAGCACACGCACAACGCC
GCGCGGCGCGGGCGACGGCACCCCCCGCCGCGTAACAGGAACAGACTGGC
CGCGANACGCCGCCGCGCCGCCGCGCCGCCGCTGCNTGCATGCCGCACTC
GCATAACACACGCCACACGCCACCCTGAGCCACCGTGNAGCAACCACAAC
ACACCAGCGGCAGACGACCGCAGACAGCGCGGAGTATACAGCACCTCTGC
GGCTGCGCCG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACAGGACAAGAGACTAAGAGAGGGGCCGTA
CAGTTTGAGAGATGGGTTGAAGTGGCAGAGCAGATGCTGTGGGGAGAGTA
ATCACTGCACAGCCCTTACTGCTGTAATCCTAAGTGCAGGGAGATTAATT
ACCCATTAGCTAGTGTGGAAGAAATTATTTTACTACCTAAGTAAAATGAG
CGTCCCCTCGGTTCAGTGTATTGATAACTCTAATGGATTGTGGGTACTCG
TGCATACTGATTCGGCATGCAGAGTAACTTGTCCATGATTTTGACTGCAT
GTAAAGTGTTAAGTGTAAGAAAAATTCCATTTAGCACAGTTCACGTTCAA
AGGACTGAGGTGGGGCCCGCTGTTTTGACTTCGCTTTTGTGTGTGGGCAC
ATGTGTGTATATGTGTGTGCTCATGCCTACCCATGCATGTGTAGAGTCCA
GAGGTCCACACTGGGTGTCTGTTGTTCACCTGATTTCTCTGAGACAGGGG
GCTGCTGGTTTTGGTTACCCTGATCGACTACTGTCATCATTCTCTTCCTG
TGATGTGGTCAACCGTGAACTCAGGGTACCTTGGGGAAAGTGGTCTGGAG
GTTCCAGGAAGCACAGGGCAGCTCAGCACCCCTTTTGCAGAACTGGGGTT
ATACTTATCCAAGTGCAGCTAAATGTGTGTCCCCTGGGGGGGCATTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_j03.g1 MSMg01no514_j03.g1 CHROMAT_FILE:
MSMg01no514_j03.g1 PHD_FILE: MSMg01no514_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:31 2005
         (538 letters)



>mm_chr1_38242942_38243879
          Length = 938

 Score = 1017 bits (526), Expect = 0.0
 Identities = 535/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggacaagagactaagagaggggccgtacagtttgagagatgggttgaagtggcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggacaagagactaagagaggggccgtacagtttgagagatgggttgaagtggcagag 260

                                                                       
Query: 61  cagatgctgtggggagagtaatcactgcacagcccttactgctgtaatcctaagtgcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatgctgtggggagagtaatcactgcacagcccttactgctgtaatcctaagtgcagg 320

                                                                       
Query: 121 gagattaattacccattagctagtgtggaagaaattattttactacctaagtaaaatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagattaattacccattagctagtgtggaagaaattattttactacctaagtaaaatgag 380

                                                                       
Query: 181 cgtcccctcggttcagtgtattgataactctaatggattgtgggtactcgtgcatactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtcccctcggttcagtgtattgataactctaatggattgtgggtactcgtgcatactga 440

                                                                       
Query: 241 ttcggcatgcagagtaacttgtccatgattttgactgcatgtaaagtgttaagtgtaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcggcatgcagagtaacttgtccatgattttgactgcatgtaaagtgttaagtgtaaga 500

                                                                       
Query: 301 aaaattccatttagcacagttcacgttcaaaggactgaggtggggcccgctgttttgact 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 aaaattccatttagcacagttcacgttcaaagaactgaggtggggcccgctgttttgact 560

                                                                       
Query: 361 tcgcttttgtgtgtgggcacatgtgtgtatatgtgtgtgctcatgcctacccatgcatgt 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 tcgcttttgtgtgtgggcacatgtgtgtatatgtatgtgctcatgcctacccatgcatgt 620

                                                                       
Query: 421 gtagagtccagaggtccacactgggtgtctgttgttcacctgatttctctgagacagggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagagtccagaggtccacactgggtgtctgttgttcacctgatttctctgagacagggg 680

                                                                     
Query: 481 gctgctggttttggttaccctgatcgactactgtcatcattctcttcctgtgatgtgg 538
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 gctgctggttttggttaccctgatcgactactgtcatcattctctccctgtgatgtgg 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)