TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCACTGCCAAGCTATTTCTCTAGCCCTATTGTATATATTTTCTTTT
TTGAATAATTGTTACTCATGGTACCTACTTGACCTTATTATATGACGAAG
ATAATCTTGTAAAACCAATCCTGCTGCCTCAACATTTTCATGTGCACAGT
TTTCTCGTGCTGGCAAGGACTGCCATTTAGAGATGTAAACTAAAAAGGGA
TACAATTTCTCCCCGCATCTTCACCTTGTGTGTGGAAGCTTTGCCATTCT
TAGACACGACGATCCTTCTATCTGCTACTTGACCATGAGGCTTCAACTCT
CAGCCTGTTGGCATTGTAGTCATGTGGCTTCTTGGTGACACAGAAATGAC
AATGAGTGGGGAAAGCATTCAATGTGTATTACCACTTCTCTCAAAATGAC
CACTTTTCCTTCACAGCCCTCCCATACTGGGTTTCAGCTGGGGTCTACTT
TACATGGATTCTTGAGATATTTATATGCACACTCTAATCCTTTTCTCATG
GCTATGACAAAATAAACAATAAAGGACTCAGCAGAGGAAAGGTTGCTGTT
GGCTCTCAGTCTGAAAGTAAAATCAGAGAGGAATGTATGAGAGCAGAGGA
TGGAGATGGGTGATCACATTGTATGTACAACCATGATCAGAGGATGACAA
TTGTTAGCTCTCTGTCTACCTCCCCCTTC

AGTCTCAGTCTGTATGGTTGTTATTCTCCACGCCGTGGTGGAGGTGGGCG
GGGGTTTCTCTTTCTCCCTGGGGGGGGGGGGGGGGCGGCGGGTCGNNATT
TTGGTGGCGCGCCCTTTTTCCTGCTGCGCCCTGCTTCCTTGCTCTTCGTG
GCGCCATTCCTACTGTTATCTCCACGGTAGTTAATAGATCTCTTCCAGGA
GGGCGGCGCGGGGTCCTGTCCGGCTTTTTTTTTTTTTTTCCTTGCTTGTT
CCTTTTCGCGGGGGATTTGGACGTTTTCAGCGGTGGCGGCCGCGCTCCCT
TTTCCTTCCTGACTCTTCTCTTTTTTTGTCCTCCTTCTCTCGTCCGTTTT
GCCGGTGTCCGGCACTTGGGGTGGGCTTCTGGCCGTCCTCTGTCTCGTCC
CGGGGGTCCGGACGGGTTCCGGTGGCTCTCACCAACCTCCGCTCCCACCT
CTGCTTCGTCCCCTCCCTCCTTCTCTCATCTGCTATCTCCCGCTCCCCCT
CCGCTTCGCGCTCTCGTCGTATGTCAGTTTTTATCTCTTCTTTCCGTCCT
TCGCTTCCGCTTATTCTTCTTCCCCACCTTCCTTCTCTTCTTCCCCCCCG
CCCCTACATTTTTCCTCCCTCTACTCCGTGCTTTTGGGGTCTTATATGCC
CTCGTCTAACATTCTCTCTCTCATTGTTCCGCGTTCCCTCTCCCCTCCTC
CTTCCTCTTACACCCCNTTACTCGTTTTCGCTCGTCGCCTTTTTCTCATA
CATCCTTTTTGTTGTGTCTCTTCTCTCCCCGCGTGTCCCCCTTCTTGTTT
TCGCCTCCGCCCCTTCCGGCTCTGTTTTGTCCTCCCCGATTTCATTTGCA
CGTCCGTTTTATAGCTGGGTGTCGTCTACTCGTCTTATATAGCTCCGTCC
CGCAGCCTATTTGCTTCTTAGCTTCCCTACCGGTCCCGGTTCTCTCTCTA
TCTTCCTGTCTACCTCTCCACN

Query= MSMg01no514_l01.b1 MSMg01no514_l01.b1 CHROMAT_FILE:
MSMg01no514_l01.b1 PHD_FILE: MSMg01no514_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:40 2005
         (598 letters)



>mm_chr1_41309285_41310282
          Length = 998

 Score = 1044 bits (540), Expect = 0.0
 Identities = 582/596 (97%), Gaps = 2/596 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcactgccaagctatttctctagccctattgtatatattttcttttttgaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcactgccaagctatttctctagccctattgtatatattttcttttttgaat 263

                                                                       
Query: 64  aattgttactcatggtacctacttgaccttattatatgacgaagataatcttgtaaaacc 123
           || |||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 264 aa-tgttactcatggcacctacttgaccttattatatgacaaagataatctagtaaaacc 322

                                                                       
Query: 124 aatcctgctgcctcaacattttcatgtgcacagttttctcgtgctggcaaggactgccat 183
           ||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 323 aatcctgcttcctcaacattttcatgtgcacagttttctagtgctggcaagggctgctat 382

                                                                       
Query: 184 ttagagatgtaaactaaaaagggatacaatttctccccgcatcttcaccttgtgtgtgga 243
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttagagatgtaagctaaaatgggatacaatttctccccgcatcttcaccttgtgtgtgga 442

                                                                       
Query: 244 agctttgccattcttagacacgacgatccttctatctgctacttgaccatgaggcttcaa 303
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 443 agctttgccattcttagacacaacgatccttctatctgctacctgaccatgaggcttcaa 502

                                                                       
Query: 304 ctctcagcctgttgg-cattgtagtcatgtggcttcttggtgacacagaaatgacaatga 362
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctctcagcctgttggccatagtagtcatgtggcttcttggtgacacagaaatgacaatga 562

                                                                       
Query: 363 gtggggaaagcattcaatgtgtattaccacttctctcaaaatgaccacttttccttcaca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtggggaaagcattcaatgtgtattaccacttctctcaaaatgaccacttttccttcaca 622

                                                                       
Query: 423 gccctcccatactgggtttcagctggggtctactttacatggattcttgagatatttata 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gccctcccatactgggtttcagctggggtctactttacatggattcttgagatatttata 682

                                                                       
Query: 483 tgcacactctaatccttttctcatggctatgacaaaataaacaataaaggactcagcaga 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgcacactctaatccttttctcatggctatgacaaaataaacaataaaggactcagcaga 742

                                                                   
Query: 543 ggaaaggttgctgttggctctcagtctgaaagtaaaatcagagaggaatgtatgag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggaaaggttgctgttggctctcagtctgaaagtaaaatcagagaggaatgtatgag 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)